College of Life Sciences, Nankai University, Tianjin 300071, China.
State Key Laboratory of Silkworm Genome Biology, College of Biotechnology, Southwest University, Chongqing 400700, China.
Int J Mol Sci. 2020 Nov 6;21(21):8329. doi: 10.3390/ijms21218329.
The development of high-throughput sequencing (next-generation sequencing technology (NGS)) and the continuous increase in experimental throughput require the upstream sample processing steps of NGS to be as simple as possible to improve the efficiency of the entire NGS process. The transposition system has fast "cut and paste" and "copy and paste" functions, and has been innovatively applied to the NGS field. For example, the Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-Seq) uses high-throughput sequencing to detect chromatin regions accessible by Tn5 transposase. Linear Amplification via Transposon Insertion (LIANTI) uses Tn5 transposase for linear amplification, haploid typing, and structural variation detection. Not only is it efficient and simple, it effectively shortens the time for NGS sample library construction, realizes large-scale and rapid sequencing, improves sequencing resolution, and can be flexibly modified for more technological innovation.
高通量测序(下一代测序技术(NGS))的发展和实验通量的不断提高,要求 NGS 的上游样本处理步骤尽可能简单,以提高整个 NGS 过程的效率。转座系统具有快速的“切割粘贴”和“复制粘贴”功能,并创新性地应用于 NGS 领域。例如,高通量测序的转座酶可及染色质分析(ATAC-Seq)使用高通量测序检测 Tn5 转座酶可及的染色质区域。通过转座子插入的线性扩增(LIANTI)使用 Tn5 转座酶进行线性扩增、单倍型分型和结构变异检测。它不仅高效简单,还有效地缩短了 NGS 样本文库构建的时间,实现了大规模快速测序,提高了测序分辨率,并可灵活修改以进行更多技术创新。