鱼类数据库（FishDB）：一个用于鱼类的综合功能基因组学数据库。
FishDB: an integrated functional genomics database for fishes.
作者信息
Yang Liandong, Xu Zetan, Zeng Honghui, Sun Ning, Wu Baosheng, Wang Cheng, Bo Jing, Li Lin, Dong Yang, He Shunping
机构信息
State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China.
State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, 650201, China.
出版信息
BMC Genomics. 2020 Nov 17;21(1):801. doi: 10.1186/s12864-020-07159-9.
BACKGROUND
Hundreds of genomes and transcriptomes of fish species have been sequenced in recent years. However, fish scholarship currently lacks a comprehensive, integrated, and up-to-date collection of fish genomic data.
RESULTS
Here we present FishDB, the first database for fish multi-level omics data, available online at http://fishdb.ihb.ac.cn . The database contains 233 fish genomes, 201 fish transcriptomes, 5841 fish mitochondrial genomes, 88 fish gene sets, 16,239 miRNAs of 65 fishes, 1,330,692 piRNAs and 4852 lncRNAs of Danio rerio, 59,040 Mb untranslated regions (UTR) of 230 fishes, and 31,918 Mb coding sequences (CDS) of 230 fishes. Among these, we newly generated a total of 11 fish genomes and 53 fish transcriptomes.
CONCLUSIONS
This release contains over 410,721.67 Mb sequences and provides search functionality, a BLAST server, JBrowse, and PrimerServer modules.
背景
近年来，数百种鱼类的基因组和转录组已被测序。然而，目前鱼类学术领域缺乏一个全面、综合且最新的鱼类基因组数据集合。
结果
在此，我们展示了FishDB，这是首个用于鱼类多组学数据的数据库，可在http://fishdb.ihb.ac.cn在线获取。该数据库包含233个鱼类基因组、201个鱼类转录组、5841个鱼类线粒体基因组、88个鱼类基因集、65种鱼类的16239个miRNA、斑马鱼的1330692个piRNA和4852个lncRNA、230种鱼类的59040兆字节非翻译区（UTR）以及230种鱼类的31918兆字节编码序列（CDS）。其中，我们新生成了总共11个鱼类基因组和53个鱼类转录组。
结论
此次发布包含超过410721.67兆字节的序列，并提供搜索功能、BLAST服务器、JBrowse和PrimerServer模块。
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