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小麦 PLATZ 转录因子的鉴定与特征分析。

Identification and Characterization of PLATZ Transcription Factors in Wheat.

机构信息

Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, China.

National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.

出版信息

Int J Mol Sci. 2020 Nov 25;21(23):8934. doi: 10.3390/ijms21238934.

Abstract

The PLATZ (plant AT-rich protein and zinc-binding protein) transcription factor family is a class of plant-specific zinc-dependent DNA-binding proteins. PLATZ has essential roles in seed endosperm development, as well as promoting cell proliferation duration in the earlier stages of the crops. In the present study, 62 genes were identified from the wheat genome, and they were unequally distributed on 15 chromosomes. According to the phylogenetic analysis, 62 genes were classified into six groups, including two groups that were unique in wheat. Members in the same groups shared similar exon-intron structures. The polyploidization, together with genome duplication of wheat, plays a crucial role in the expansion of the family. Transcriptome data indicated a distinct divergence expression pattern of genes that could be clustered into four modules. The in Module b possessed a seed-specific expression pattern and displayed obvious high expression in the earlier development stage of seeds. Subcellular localization data of suggesting that they likely perform a function as a conventional transcription factor. This study provides insight into understanding the structure divergence, evolutionary features, expression profiles, and potential function of PLATZ in wheat.

摘要

PLATZ(植物富含 AT 的蛋白和锌结合蛋白)转录因子家族是一类植物特异性锌依赖性 DNA 结合蛋白。PLATZ 在种子胚乳发育中具有重要作用,并在作物早期促进细胞增殖持续时间。本研究从小麦基因组中鉴定出 62 个基因,它们不均匀分布在 15 条染色体上。根据系统发育分析,62 个基因被分为六个组,其中两组在小麦中是独特的。同一组的成员具有相似的外显子-内含子结构。多倍体化以及小麦基因组的重复,在家族的扩张中起着至关重要的作用。转录组数据表明,基因的表达模式存在明显的差异,可以聚类成四个模块。模块 b 中的 基因具有种子特异性表达模式,在种子发育的早期阶段表现出明显的高表达。 的亚细胞定位数据表明,它们可能作为常规转录因子发挥功能。本研究深入了解了 PLATZ 在小麦中的结构分化、进化特征、表达谱和潜在功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26e8/7728089/6b1cb7b2eb35/ijms-21-08934-g001.jpg

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