Integrative Omics, Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Bioproducts Sciences and Engineering Laboratory, Department of Biological Systems Engineering, Washington State University, Richland, Washington.
Am J Physiol Cell Physiol. 2021 Feb 1;320(2):C182-C194. doi: 10.1152/ajpcell.00040.2020. Epub 2020 Dec 2.
The thiol redox proteome refers to all proteins whose cysteine thiols are subjected to various redox-dependent posttranslational modifications (PTMs) including glutathionylation (SSG), nitrosylation (SNO), sulfenylation (SOH), and sulfhydration (SSH). These modifications can impact various aspects of protein function such as activity, binding, conformation, localization, and interactions with other molecules. To identify novel redox proteins in signaling and regulation, it is highly desirable to have robust redox proteomics methods that can provide global, site-specific, and stoichiometric quantification of redox PTMs. Mass spectrometry (MS)-based redox proteomics has emerged as the primary platform for broad characterization of thiol PTMs in cells and tissues. Herein, we review recent advances in MS-based redox proteomics approaches for quantitative profiling of redox PTMs at physiological or oxidative stress conditions and highlight some recent applications. Considering the relative maturity of available methods, emphasis will be on two types of modifications: ) total oxidation (i.e., all reversible thiol modifications), the level of which represents the overall redox state, and ) glutathionylation, a major form of reversible thiol oxidation. We also discuss the significance of stoichiometric measurements of thiol PTMs as well as future perspectives toward a better understanding of cellular redox regulatory networks in cells and tissues.
硫醇氧化还原蛋白质组是指所有其半胱氨酸巯基发生各种依赖于氧化还原的翻译后修饰(PTM)的蛋白质,包括谷胱甘肽化(SSG)、亚硝基化(SNO)、磺酰化(SOH)和巯基化(SSH)。这些修饰可以影响蛋白质功能的各个方面,如活性、结合、构象、定位以及与其他分子的相互作用。为了在信号转导和调控中鉴定新的氧化还原蛋白,非常需要有强大的氧化还原蛋白质组学方法,这些方法能够提供氧化还原 PTM 的全局、特异性和化学计量定量。基于质谱(MS)的氧化还原蛋白质组学已成为细胞和组织中硫醇 PTM 广泛表征的主要平台。本文综述了近年来在定量分析生理或氧化应激条件下氧化还原 PTM 方面的 MS 基氧化还原蛋白质组学方法的最新进展,并强调了一些最新的应用。鉴于现有方法的相对成熟性,重点将放在两种修饰上:1)总氧化(即所有可逆的巯基修饰),其水平代表整体氧化还原状态,以及 2)谷胱甘肽化,一种主要的可逆巯基氧化形式。我们还讨论了硫醇 PTM 的化学计量测量的意义,以及对更好地理解细胞和组织中细胞氧化还原调控网络的未来展望。