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韦氏芽孢杆菌 NST6 全基因组序列与解淀粉芽孢杆菌操作亚群的比较。

Complete genome sequence of Bacillus velezensis NST6 and comparison with the species belonging to operational group B. amyloliquefaciens.

机构信息

Smart Farm Research Center, Korea Institute of Science and Technology, Gangneung 25451, Republic of Korea.

Natural Product Research Center, Korea Institute of Science and Technology, Gangneung 25451, Republic of Korea.

出版信息

Genomics. 2021 Jan;113(1 Pt 1):380-386. doi: 10.1016/j.ygeno.2020.12.011. Epub 2020 Dec 13.

Abstract

Bacillus spp. play important roles in production of bioactive natural products with potential agricultural and medical applications. The three families of lipopeptides produced by Bacillus spp. have been most recognized for their antagonistic activity against other microbes, i.e. fengycin, iturin, and surfactin. A novel strain NST6 was isolated from soil and identified as B. velezensis based on phylogenomic analysis. Genome analysis revealed 21 putative biosynthetic gene clusters including the ones responsible for producing bacillomycin and surfactin. However, fengycin cluster was compromised with absence or partial disruption of three non-ribosomal peptide synthetases. Distribution of biosynthetic gene clusters showed that clusters for iturin families were well conserved in 327 genomes of the species belonging to the operational group B. amyloliquefaciens. However, clusters for fengycin and surfactin showed dynamic distribution at gene level. Comparative analysis of closely related species would provide new insights to the diversity in genetic elements for secondary metabolites.

摘要

芽孢杆菌属在具有农业和医学应用潜力的生物活性天然产物的生产中发挥着重要作用。芽孢杆菌属产生的三类脂肽已因其对其他微生物的拮抗活性而得到最广泛的认可,即丰原素、伊枯草菌素和表面活性素。一种新型菌株 NST6 是从土壤中分离出来的,基于基因组分析鉴定为解淀粉芽孢杆菌。基因组分析显示了 21 个可能的生物合成基因簇,包括负责产生杆菌霉素和表面活性素的基因簇。然而,丰原素簇由于三个非核糖体肽合成酶的缺失或部分破坏而受到影响。生物合成基因簇的分布表明,属于解淀粉芽孢杆菌操作群的 327 个物种的伊枯草菌素家族的基因簇得到了很好的保守。然而,丰原素和表面活性素的基因簇在基因水平上显示出动态分布。对密切相关物种的比较分析将为次生代谢物遗传元件的多样性提供新的见解。

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