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.的完整叶绿体基因组序列

The complete chloroplast genome sequence of .

作者信息

Wang Yi, Hao Jiabo, Yuan Xiaolong, Lu Bin

机构信息

Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming, Yunnan, People's Republic of China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 11;4(2):3465-3466. doi: 10.1080/23802359.2019.1674706.

DOI:10.1080/23802359.2019.1674706
PMID:33366041
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707192/
Abstract

The first complete chloroplast genome sequences of were reported in this study. The complete chloroplast genome (cpDNA) sequence of was determined from Illumina HiSeq pair-end sequencing data. The cpDNA is 160,920 bp in length, contains a large single-copy region (LSC) of 88,778 bp and a small single-copy region (SSC) of 19,172 bp, which were separated by a pair of inverted repeat (IR) regions of 26,477 bp. The genome contains 129 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 36.8% and the corresponding values of the LSC, SSC, and IR regions are 34.6, 30.8, and 42.7%, respectively. Further, the phylogenomic analysis showed that clustered together with , .

摘要

本研究报道了首个完整的叶绿体基因组序列。通过Illumina HiSeq双末端测序数据确定了叶绿体基因组(cpDNA)序列。该cpDNA长度为160,920 bp,包含一个88,778 bp的大单拷贝区域(LSC)和一个19,172 bp的小单拷贝区域(SSC),它们被一对26,477 bp的反向重复(IR)区域隔开。该基因组包含129个基因,包括84个蛋白质编码基因、8个核糖体RNA基因和37个转运RNA基因。全基因组的总体GC含量为36.8%,LSC、SSC和IR区域的相应值分别为34.6%、30.8%和42.7%。此外,系统发育基因组分析表明,与、聚集在一起。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bfd/7707192/6a8916eb4f2a/TMDN_A_1674706_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bfd/7707192/6a8916eb4f2a/TMDN_A_1674706_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4bfd/7707192/6a8916eb4f2a/TMDN_A_1674706_F0001_B.jpg

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