Zheng Yuan, Luo Yana, Li Yunqing, Wang Yi
Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming, People's Republic of China.
College of Forestry, Southwest Forestry University, Kunming, People's Republic of China.
Mitochondrial DNA B Resour. 2019 Dec 12;5(1):198-199. doi: 10.1080/23802359.2019.1698994.
The first complete chloroplast genome (cpDNA) sequence of was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 158,603 bp in length, contains a large single copy region (LSC) of 89,386 bp and a small single copy region (SSC) of 18,181 bp, which were separated by a pair of inverted repeats (IR) regions of 25,511 bp. The genome contains 129 genes, including 84 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 39.0%, and the corresponding values of the LSC, SSC, and IR regions are 37.7%, 33.9%, and 43.0%, respectively. Further phylogenomic analysis showed that clustered in a clade in genus .
本研究通过Illumina HiSeq双端测序数据确定了首个完整的叶绿体基因组（cpDNA）序列。该cpDNA长度为158,603 bp，包含一个89,386 bp的大单拷贝区域（LSC）和一个18,181 bp的小单拷贝区域（SSC），它们被一对25,511 bp的反向重复（IR）区域隔开。该基因组包含129个基因，包括84个蛋白质编码基因、8个核糖体RNA基因和37个转运RNA基因。全基因组的总体GC含量为39.0%，LSC、SSC和IR区域的相应值分别为37.7%、33.9%和43.0%。进一步的系统发育基因组分析表明，[具体物种名称]聚类在[属名]属的一个分支中。
