Wang Yi, Yuan Xiaolong, Zhang Jinfeng
Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming, People's Republic of China.
Mitochondrial DNA B Resour. 2019 Nov 12;4(2):3950-3951. doi: 10.1080/23802359.2019.1688114.
The first complete chloroplast genome (cpDNA) sequence of was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,818 bp in length, contains a large single-copy region (LSC) of 85,666 bp and a small single-copy region (SSC) of 18,360 bp, which were separated by a pair of inverted repeat (IR) regions of 28,396 bp. The genome contains 133 genes, including 88 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.9%, and the corresponding values of the LSC, SSC, and IR regions are 36.2%, 31.9%, and 42.4%, respectively. Further phylogenomic analysis showed that and clustered in a clade in family Sapindaceae.
本研究通过Illumina HiSeq双端测序数据确定了首个完整的叶绿体基因组（cpDNA）序列。该cpDNA长度为160,818 bp，包含一个85,666 bp的大单拷贝区域（LSC）和一个18,360 bp的小单拷贝区域（SSC），它们被一对28,396 bp的反向重复（IR）区域隔开。该基因组包含133个基因，包括88个蛋白质编码基因、8个核糖体RNA基因和37个转运RNA基因。全基因组的总体GC含量为37.9%，LSC、SSC和IR区域的相应值分别为36.2%、31.9%和42.4%。进一步的系统发育基因组分析表明，[具体物种名称]和[具体物种名称]在无患子科的一个分支中聚类。
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