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一种新候选品种——桑杰(桑科)的叶绿体全基因组:种内变异图谱的初步研究

The complete chloroplast genome of a new candidate cultivar, Sang Jae, of Nakai (Oleaceae): initial step of intraspecies variations atlas.

作者信息

Min Juhyeon, Kim Yongsung, Xi Hong, Jang Taewon, Kim Gwanho, Park Jongsun, Park Jae-Ho

机构信息

InfoBoss Co., Ltd., Seoul, Republic of Korea.

InfoBoss Research Center, Seoul, Republic of Korea.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 23;4(2):3716-3718. doi: 10.1080/23802359.2019.1679678.

Abstract

Chloroplast genome of Sang Jae, new candidate cultivar of Nakai, has been sequenced to reveal infraspecific relationship of wildtypes and cultivars. Its length is 156,008 bp long (GC ratio is 37.8%) and has four subregions: 86,773 bp of large single copy (35.8%) and 17,827 bp of small single copy (31.9%) regions are separated by 25,704 bp of inverted repeat (43.2%) regions including 133 genes (87 protein-coding genes, eight rRNAs, and 37 tRNAs). Phylogenetic trees show that is clustered with twelve species and intraspecies variations level is similar to .

摘要

中井新候选品种桑杰的叶绿体基因组已被测序,以揭示野生型和栽培品种的种内关系。其长度为156,008 bp(GC含量为37.8%),有四个亚区域:86,773 bp的大单拷贝区域(35.8%)和17,827 bp的小单拷贝区域(31.9%)被25,704 bp的反向重复区域(43.2%)隔开,该反向重复区域包含133个基因(87个蛋白质编码基因、8个rRNA和37个tRNA)。系统发育树显示,桑杰与12个中井物种聚类在一起,种内变异水平与中井物种相似。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/424f/7707604/66f372490f75/TMDN_A_1679678_F0001_C.jpg

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