……的完整叶绿体基因组序列
The complete chloroplast genome sequence of .
作者信息
Zhang Jinfeng, Li Yunqing, Wang Yi
机构信息
Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming Yunnan, People's Republic of China.
出版信息
Mitochondrial DNA B Resour. 2020 Jan 10;5(1):472-473. doi: 10.1080/23802359.2019.1704649.
The first complete chloroplast genome (cpDNA) sequence of was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,978 bp in length, contains a large single-copy region (LSC) of 88,146 bp and a small single-copy region (SSC) of 18,646 bp, which were separated by a pair of inverted repeats (IR) regions of 27,089 bp. The genome contains 129 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.5%%, and the corresponding values of the LSC, SSC, and IR regions are 35.5%, 31.8%, and 42.7%, respectively. Further phylogenomic analysis showed that , and clustered in a clade in family Meliaceae.
本研究通过Illumina HiSeq双端测序数据确定了首个完整的叶绿体基因组（cpDNA）序列。该cpDNA长度为160,978 bp，包含一个88,146 bp的大单拷贝区域（LSC）和一个18,646 bp的小单拷贝区域（SSC），它们被一对27,089 bp的反向重复（IR）区域隔开。该基因组包含129个基因，其中包括84个蛋白质编码基因、8个核糖体RNA基因和37个转运RNA基因。全基因组的总体GC含量为37.5%，LSC、SSC和IR区域的相应值分别为35.5%、31.8%和42.7%。进一步的系统发育基因组分析表明，[物种名称1]、[物种名称2]和[物种名称3]聚集在楝科的一个分支中。
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