Yang Dejun, Qiu Qiong, Xu Linhong, Xu Yumei, Wang Yi
Institute of Tropical Forestry, Yunnan Academy of Forestry, Kunming, People's Republic of China.
Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming, People's Republic of China.
Mitochondrial DNA B Resour. 2019 Nov 12;4(2):3979-3980. doi: 10.1080/23802359.2019.1688711.
The first complete chloroplast genome (cpDNA) sequence of was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,176 bp in length, contains a large single-copy region (LSC) of 87,536 bp and a small single-copy region (SSC) of 18,576 bp, which were separated by a pair of inverted repeats (IR) regions of 27,032 bp. The genome contains 131 genes, including 86 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 38.2%, and the corresponding values of the LSC, SSC, and IR regions are 36.5, 33.0, and 42.9%, respectively. Further, phylogenomic analysis showed that , and clustered in a clade in family Rutaceae.
在本研究中，通过Illumina HiSeq双端测序数据确定了首个完整的叶绿体基因组（cpDNA）序列。该cpDNA长度为160,176 bp，包含一个87,536 bp的大单拷贝区域（LSC）和一个18,576 bp的小单拷贝区域（SSC），它们被一对27,032 bp的反向重复（IR）区域隔开。该基因组包含131个基因，包括86个蛋白质编码基因、8个核糖体RNA基因和37个转移RNA基因。全基因组的总体GC含量为38.2%，LSC、SSC和IR区域的相应值分别为36.5%、33.0%和42.9%。此外，系统发育基因组分析表明，[具体物种名称缺失]在芸香科的一个分支中聚类。
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