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濒危兰科植物的完整叶绿体基因组序列。

The complete chloroplast genome sequence of the threatened (Orchidaceae).

作者信息

Zhang Li-Jie, Ding Rui, Meng Wei-Wei, Hu Hua-Lei, Chen Xu-Hui, Wu Hai-Hong

机构信息

College of Forestry, Shenyang Agricultural University, Shenyang, China.

College of Land and Environment, Shenyang Agricultural University, Shenyang, China.

出版信息

Mitochondrial DNA B Resour. 2019 Nov 22;4(2):4220-4222. doi: 10.1080/23802359.2019.1693933.

DOI:10.1080/23802359.2019.1693933
PMID:33366391
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707734/
Abstract

The complete chloroplast genome of , a rare species in the family Orchidaceae was reported in this study. The genome size is 175,122 bp in length, and contains four sub-regions: 97,486 bp of large single copy (LSC) and 22,260 bp of small copy (SSC) regions, separated by 27,688 bp of inverted repeat (IR) regions. A total of 133 genes were annotated, including 87 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The GC content of this cp genome is 34.36%. Phylogenetic analysis revealed a close relationship between with and . This is the first complete cp genome for that would be useful for conservation and phylogenetic studies of this species.

摘要

本研究报道了兰科一种珍稀物种的完整叶绿体基因组。该基因组长度为175,122 bp,包含四个亚区域:97,486 bp的大单拷贝(LSC)区域和22,260 bp的小单拷贝(SSC)区域,由27,688 bp的反向重复(IR)区域隔开。共注释了133个基因,包括87个蛋白质编码基因、38个tRNA基因和8个rRNA基因。该叶绿体基因组的GC含量为34.36%。系统发育分析表明,[物种名称1]与[物种名称2]和[物种名称3]之间关系密切。这是[物种名称1]的首个完整叶绿体基因组,将有助于该物种的保护和系统发育研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1abe/7707734/9837aafa81bf/TMDN_A_1693933_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1abe/7707734/9837aafa81bf/TMDN_A_1693933_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1abe/7707734/9837aafa81bf/TMDN_A_1693933_F0001_B.jpg

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本文引用的文献

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Orchid conservation: how can we meet the challenges in the twenty-first century?兰花保护:我们如何应对21世纪的挑战?
Bot Stud. 2018 Jun 5;59(1):16. doi: 10.1186/s40529-018-0232-z.
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HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching.HomBlocks:基于局部共线性块搜索的细胞器系统发育基因组学多重比对构建流水线。
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MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
七种濒危物种的叶绿体基因组比较及兰科植物的系统发育关系
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Comparative chloroplast genomes of photosynthetic orchids: insights into evolution of the Orchidaceae and development of molecular markers for phylogenetic applications.光合兰花的叶绿体基因组比较:对兰科植物进化及系统发育应用分子标记开发的见解
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