• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

.的完整叶绿体基因组

The complete chloroplast genome of .

作者信息

Ma Mengli, Lu Bingyue

机构信息

Key Laboratory for Research and Utilization of Characteristic Biological Resources in Southern Yunnan, College of Life Science and Technology, Honghe University, Mengzi, Yunnan, PR China.

出版信息

Mitochondrial DNA B Resour. 2020 Jan 24;5(1):848-849. doi: 10.1080/23802359.2020.1717382.

DOI:10.1080/23802359.2020.1717382
PMID:33366779
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7748665/
Abstract

(Zingiberaceae) is an important edible and medicinal crop. The complete chloroplast (cp) genome of was determined using Illumina sequencing platform. The size of whole cp genome was 163,648 bp, containing a small single copy (SSC) region of 15,355 bp and a large single copy (LSC) region of 88,741 bp, which were separated by a pair of inverted repeat (IRs) regions (29,776 bp). The cp genome contained 133 genes, including eight ribosomal RNA genes (4 rRNA species), 38 transfer RNA genes (30 tRNA species) and 87 protein-coding genes (79 PCG species). The overall GC content of cp genome is 36.02%. To investigate the evolution status of , as well as Zingiberales, a phylogenetic tree with and other 16 species was constructed based on their complete chloroplast genomes. Phylogenetic analysis revealed that was closely related to .

摘要

(姜科)是一种重要的食用和药用作物。利用Illumina测序平台测定了[植物名称]的完整叶绿体(cp)基因组。整个cp基因组大小为163,648 bp,包含一个15,355 bp的小单拷贝(SSC)区域和一个88,741 bp的大单拷贝(LSC)区域,它们被一对反向重复(IR)区域(29,776 bp)隔开。[植物名称]的cp基因组包含133个基因,包括8个核糖体RNA基因(4种rRNA)、38个转运RNA基因(30种tRNA)和87个蛋白质编码基因(79种PCG)。[植物名称]cp基因组的总体GC含量为36.02%。为了研究[植物名称]以及姜目植物的进化地位,基于其完整叶绿体基因组构建了包含[植物名称]和其他16个物种的系统发育树。系统发育分析表明[植物名称]与[另一植物名称]密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b23e/7748665/8f65b57a3bc9/TMDN_A_1717382_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b23e/7748665/8f65b57a3bc9/TMDN_A_1717382_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b23e/7748665/8f65b57a3bc9/TMDN_A_1717382_F0001_B.jpg

相似文献

1
The complete chloroplast genome of ..的完整叶绿体基因组
Mitochondrial DNA B Resour. 2020 Jan 24;5(1):848-849. doi: 10.1080/23802359.2020.1717382.
2
The complete chloroplast genome sequence of Lour.Lour.的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2020 Feb 3;5(1):1042-1043. doi: 10.1080/23802359.2020.1721358.
3
Complete chloroplast genome sequences of two species (Zingiberaceae).两种姜科植物的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2019 Oct 26;4(2):3795-3796. doi: 10.1080/23802359.2019.1682951.
4
Complete chloroplast genome of the medicinal plant : gene organization, comparative analysis, and phylogenetic relationships within Zingiberales.药用植物的完整叶绿体基因组:姜目植物的基因组织、比较分析及系统发育关系
Chin Med. 2018 Feb 13;13:10. doi: 10.1186/s13020-018-0164-2. eCollection 2018.
5
Complete chloroplast genome sequence of ..的完整叶绿体基因组序列
Mitochondrial DNA B Resour. 2019 Jul 22;4(2):2673-2674. doi: 10.1080/23802359.2019.1644237.
6
Complete Chloroplast Genome Sequences of and : Molecular Structures and Comparative Analysis.和 :完整的叶绿体基因组序列。分子结构与比较分析。
Molecules. 2019 Jan 29;24(3):474. doi: 10.3390/molecules24030474.
7
Comparison and Phylogenetic Analysis of Chloroplast Genomes of Three Medicinal and Edible Species.三种药用及食用植物叶绿体基因组的比较与系统进化分析。
Int J Mol Sci. 2019 Aug 19;20(16):4040. doi: 10.3390/ijms20164040.
8
Complete chloroplast genome sequence of and its phylogenetic analysis.[物种名称]的完整叶绿体基因组序列及其系统发育分析。 (注:原文中“of and its phylogenetic analysis”中间缺少具体物种名称,这里按常规补充了[物种名称])
Mitochondrial DNA B Resour. 2018 Feb 1;3(1):149-150. doi: 10.1080/23802359.2018.1431074.
9
Characterization of the complete chloroplast genome of (Zingiberaceae).姜科(Zingiberaceae)植物叶绿体全基因组的特征分析。
Mitochondrial DNA B Resour. 2019 Jul 12;4(2):2431-2432. doi: 10.1080/23802359.2019.1637295.
10
The Complete Amomum kravanh Chloroplast Genome Sequence and Phylogenetic Analysis of the Commelinids.《完全的阳春砂叶绿体基因组序列与鸭跖草族的系统发育分析》
Molecules. 2017 Nov 1;22(11):1875. doi: 10.3390/molecules22111875.

引用本文的文献

1
The complete chloroplast genome of Roxb., an ornamental, edible and medicinal plant.一种兼具观赏、食用和药用价值的植物——罗克斯伯氏植物(Roxb.)的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2023 Nov 15;8(11):1253-1257. doi: 10.1080/23802359.2023.2281029. eCollection 2023.
2
De novo transcriptome assembly, gene annotation, and EST-SSR marker development of an important medicinal and edible crop, Amomum tsaoko (Zingiberaceae).从头转录组组装、基因注释和重要药用和食用作物砂仁(姜科)的 EST-SSR 标记开发。
BMC Plant Biol. 2022 Sep 29;22(1):467. doi: 10.1186/s12870-022-03827-y.

本文引用的文献

1
The Complete Amomum kravanh Chloroplast Genome Sequence and Phylogenetic Analysis of the Commelinids.《完全的阳春砂叶绿体基因组序列与鸭跖草族的系统发育分析》
Molecules. 2017 Nov 1;22(11):1875. doi: 10.3390/molecules22111875.
2
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.MEGA6:分子进化遗传学分析版本 6.0。
Mol Biol Evol. 2013 Dec;30(12):2725-9. doi: 10.1093/molbev/mst197. Epub 2013 Oct 16.
3
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.SOAPdenovo2:一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
4
Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree.捕获叶绿体变异进行分子生态学研究:一种应用于热带雨林树的简单下一代测序方法。
BMC Ecol. 2013 Mar 14;13:8. doi: 10.1186/1472-6785-13-8.
5
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
6
Large scale library generation for high throughput sequencing.大规模文库生成用于高通量测序。
PLoS One. 2011 Apr 27;6(4):e19119. doi: 10.1371/journal.pone.0019119.
7
Automatic annotation of organellar genomes with DOGMA.使用DOGMA对细胞器基因组进行自动注释。
Bioinformatics. 2004 Nov 22;20(17):3252-5. doi: 10.1093/bioinformatics/bth352. Epub 2004 Jun 4.