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利用微晶电子衍射对合成非标准氨基酸进行快速结构分析

Rapid Structural Analysis of a Synthetic Non-canonical Amino Acid by Microcrystal Electron Diffraction.

作者信息

Gleason Patrick R, Nannenga Brent L, Mills Jeremy H

机构信息

School of Molecular Sciences, Arizona State University, Tempe, AZ, United States.

Center for Molecular Design and Biomimetics, The Biodesign Institute, Arizona State University, Tempe, AZ, United States.

出版信息

Front Mol Biosci. 2021 Jan 8;7:609999. doi: 10.3389/fmolb.2020.609999. eCollection 2020.

DOI:10.3389/fmolb.2020.609999
PMID:33490105
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7821094/
Abstract

Structural characterization of small molecules is a crucial component of organic synthesis. In this work, we applied microcrystal electron diffraction (MicroED) to analyze the structure of the product of an enzymatic reaction that was intended to produce the unnatural amino acid 2,4-dihydroxyphenylalanine (24DHF). Characterization of our isolated product with nuclear magnetic resonance spectroscopy (NMR) and mass spectrometry (MS) suggested that an isomer of 24DHF had been formed. Microcrystals present in the isolated product were then used to determine its structure to 0.62 Å resolution, which confirmed its identity as 2-amino-2-(2,4-dihydroxyphenyl)propanoic acid (24DHPA). Moreover, the MicroED structural model indicated that both enantiomeric forms of 24DHPA were present in the asymmetric unit. Notably, the entire structure determination process including setup, data collection, and refinement was completed in ~1 h. The MicroED data not only bolstered previous results obtained using NMR and MS but also immediately provided information about the stereoisomers present in the product, which is difficult to achieve using NMR and MS alone. Our results therefore demonstrate that MicroED methods can provide useful structural information on timescales that are similar to many commonly used analytical methods and can be added to the existing suite of small molecule structure determination tools in future studies.

摘要

小分子的结构表征是有机合成的关键组成部分。在这项工作中,我们应用微晶电子衍射(MicroED)来分析一个酶促反应产物的结构,该反应旨在生成非天然氨基酸2,4-二羟基苯丙氨酸(24DHF)。用核磁共振光谱(NMR)和质谱(MS)对我们分离得到的产物进行表征表明,形成的是24DHF的一种异构体。然后利用分离产物中存在的微晶将其结构确定到0.62 Å的分辨率,这证实了其为2-氨基-2-(2,4-二羟基苯基)丙酸(24DHPA)。此外,MicroED结构模型表明24DHPA的两种对映体形式都存在于不对称单元中。值得注意的是,整个结构确定过程,包括设置、数据收集和精修,在约1小时内完成。MicroED数据不仅支持了先前使用NMR和MS获得的结果,还立即提供了有关产物中存在的立体异构体的信息,而仅使用NMR和MS很难做到这一点。因此,我们的结果表明,MicroED方法可以在与许多常用分析方法相似的时间尺度上提供有用的结构信息,并且在未来的研究中可以添加到现有的小分子结构确定工具中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19c4/7821094/0f17e7d5ad42/fmolb-07-609999-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19c4/7821094/9ab6d4902c43/fmolb-07-609999-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19c4/7821094/3e0384fe1fa6/fmolb-07-609999-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19c4/7821094/558a569fc5e5/fmolb-07-609999-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19c4/7821094/0f17e7d5ad42/fmolb-07-609999-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19c4/7821094/9ab6d4902c43/fmolb-07-609999-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19c4/7821094/3e0384fe1fa6/fmolb-07-609999-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19c4/7821094/558a569fc5e5/fmolb-07-609999-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19c4/7821094/0f17e7d5ad42/fmolb-07-609999-g0004.jpg

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