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一种监测人群中 COVID-19 既往感染比例的间接方法:在美国的应用。

An indirect method to monitor the fraction of people ever infected with COVID-19: An application to the United States.

机构信息

Wittgenstein Centre for Demography and Global Human Capital (IIASA, OeAW, University of Vienna), Vienna Institute of Demography/Austrian Academy of Sciences, Vienna, Austria.

Institute of Statistics and Mathematical Methods in Economics, TU Wien, Vienna, Austria.

出版信息

PLoS One. 2021 Jan 28;16(1):e0245845. doi: 10.1371/journal.pone.0245845. eCollection 2021.

Abstract

The number of COVID-19 infections is key for accurately monitoring the pandemics. However, due to differential testing policies, asymptomatic individuals and limited large-scale testing availability, it is challenging to detect all cases. Seroprevalence studies aim to address this gap by retrospectively assessing the number of infections, but they can be expensive and time-intensive, limiting their use to specific population subgroups. In this paper, we propose a complementary approach that combines estimated (1) infection fatality rates (IFR) using a Bayesian melding SEIR model with (2) reported case-fatality rates (CFR) in order to indirectly estimate the fraction of people ever infected (from the total population) and detected (from the ever infected). We apply the technique to the U.S. due to their remarkable regional diversity and because they count with almost a quarter of all global confirmed cases and deaths. We obtain that the IFR varies from 1.25% (0.39-2.16%, 90% CI) in Florida, the most aged population, to 0.69% in Utah (0.21-1.30%, 90% CI), the youngest population. By September 8, 2020, we estimate that at least five states have already a fraction of people ever infected between 10% and 20% (New Jersey, New York, Massachussets, Connecticut, and District of Columbia). The state with the highest estimated fraction of people ever infected is New Jersey with 17.3% (10.0, 55.8, 90% CI). Moreover, our results indicate that with a probability of 90 percent the fraction of detected people among the ever infected since the beginning of the epidemic has been less than 50% in 15 out of the 20 states analyzed in this paper. Our approach can be a valuable tool that complements seroprevalence studies and indicates how efficient have testing policies been since the beginning of the outbreak.

摘要

新冠病毒感染人数是准确监测疫情的关键。然而,由于检测政策的差异、无症状个体的存在以及大规模检测能力的限制,很难发现所有病例。血清流行率研究旨在通过回顾性评估感染人数来弥补这一差距,但这些研究可能成本高昂且耗时,限制了它们在特定人群亚组中的应用。在本文中,我们提出了一种互补的方法,该方法结合了使用贝叶斯融合 SEIR 模型估计的(1)感染病死率(IFR)和(2)报告的病死率(CFR),以间接估计曾经感染(来自总人口)和检测到的(来自曾经感染)的人群比例。我们选择美国作为研究对象,因为其具有显著的地域多样性,并且占全球所有确诊病例和死亡病例的近四分之一。我们发现,IFR 从佛罗里达州(人口最老龄化的地区)的 1.25%(0.39-2.16%,90%CI)到犹他州(人口最年轻的地区)的 0.69%不等。截至 2020 年 9 月 8 日,我们估计至少有五个州的曾经感染人群比例已经在 10%-20%之间(新泽西州、纽约州、马萨诸塞州、康涅狄格州和哥伦比亚特区)。曾经感染人群比例最高的州是新泽西州,为 17.3%(10.0,55.8,90%CI)。此外,我们的结果表明,在本文分析的 20 个州中,有 15 个州自疫情开始以来,曾经感染人群中被检测到的人群比例有 90%的概率低于 50%。我们的方法可以作为一种有价值的工具,补充血清流行率研究,并指示自疫情爆发以来检测政策的效率如何。

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