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深度学习方法在挑战蚊媒的物种和性别鉴定方面的应用。

Deep learning approaches for challenging species and gender identification of mosquito vectors.

机构信息

Faculty of Medicine, King Mongkut's Institute of Technology Ladkrabang, 1 chalongkrug road, Bangkok, Thailand.

Faculty of Medical Technology, Prince of Songkla University, Songkhla, Thailand.

出版信息

Sci Rep. 2021 Mar 1;11(1):4838. doi: 10.1038/s41598-021-84219-4.

DOI:10.1038/s41598-021-84219-4
PMID:33649429
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7921658/
Abstract

Microscopic observation of mosquito species, which is the basis of morphological identification, is a time-consuming and challenging process, particularly owing to the different skills and experience of public health personnel. We present deep learning models based on the well-known you-only-look-once (YOLO) algorithm. This model can be used to simultaneously classify and localize the images to identify the species of the gender of field-caught mosquitoes. The results indicated that the concatenated two YOLO v3 model exhibited the optimal performance in identifying the mosquitoes, as the mosquitoes were relatively small objects compared with the large proportional environment image. The robustness testing of the proposed model yielded a mean average precision and sensitivity of 99% and 92.4%, respectively. The model exhibited high performance in terms of the specificity and accuracy, with an extremely low rate of misclassification. The area under the receiver operating characteristic curve (AUC) was 0.958 ± 0.011, which further demonstrated the model accuracy. Thirteen classes were detected with an accuracy of 100% based on a confusion matrix. Nevertheless, the relatively low detection rates for the two species were likely a result of the limited number of wild-caught biological samples available. The proposed model can help establish the population densities of mosquito vectors in remote areas to predict disease outbreaks in advance.

摘要

对蚊种进行微观观察是形态鉴定的基础,但这是一个既耗时又具有挑战性的过程,尤其是因为公共卫生人员的技能和经验不同。我们提出了基于著名的单次只看一次(YOLO)算法的深度学习模型。该模型可用于同时对图像进行分类和定位,以识别野外捕获的蚊子的性别和种类。结果表明,串联的两个 YOLO v3 模型在识别蚊子方面表现出最佳性能,因为与大比例环境图像相比,蚊子相对较小。对所提出模型的稳健性测试产生了 99%的平均精度和 92.4%的敏感性。该模型在特异性和准确性方面表现出了很高的性能,错误分类率极低。接收器操作特征曲线下的面积(AUC)为 0.958 ± 0.011,进一步证明了模型的准确性。基于混淆矩阵,检测到 13 个类别,准确率为 100%。然而,两种物种的检测率相对较低,可能是由于可用的野生捕获生物样本数量有限。所提出的模型可以帮助在偏远地区建立蚊媒种群密度,提前预测疾病爆发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046c/7921658/0e84ef74515a/41598_2021_84219_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046c/7921658/b2f0dc161070/41598_2021_84219_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046c/7921658/be210d9e7521/41598_2021_84219_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046c/7921658/188bd4b5e9e0/41598_2021_84219_Fig3a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046c/7921658/0e84ef74515a/41598_2021_84219_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046c/7921658/b2f0dc161070/41598_2021_84219_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046c/7921658/be210d9e7521/41598_2021_84219_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046c/7921658/188bd4b5e9e0/41598_2021_84219_Fig3a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046c/7921658/0e84ef74515a/41598_2021_84219_Fig4_HTML.jpg

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