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使用下一代测序技术评估外泌体微小RNA作为急性心肌梗死潜在诊断生物标志物的研究

Evaluation of exosomal miRNAs as potential diagnostic biomarkers for acute myocardial infarction using next-generation sequencing.

作者信息

Guo Mei, Li Rui, Yang Linfeng, Zhu Qianhua, Han Mo, Chen Zhichao, Ruan Fengying, Yuan Yongxian, Liu Zhenni, Huang Binbin, Bai Mingzhou, Wang Hongqi, Zhang Chao, Tang Chong

机构信息

BGI Genomics, BGI-Shenzhen, Shenzhen, China.

Department of Cardiovascular Surgery, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

出版信息

Ann Transl Med. 2021 Feb;9(3):219. doi: 10.21037/atm-20-2337.

Abstract

BACKGROUND

Acute myocardial infarction (AMI) is one of the most common global causes of death. Although considerable progress has been made in AMI diagnosis, there remains an urgent need for novel diagnostic biomarkers for its prevention and treatment. Functional exosomal microRNAs (miRNAs) are recognized as potential biomarkers in many diseases. This study's objective was to identify specific plasma exosomal miRNAs with biomarker potential for early AMI detection.

METHODS

Exosomes from the plasma of 26 coronary artery disease (CAD) patients, 55 AMI patients, and 37 healthy controls were isolated and characterized by transmission electron microcopy (TEM), western blotting, and nanoparticle tracking analysis (NTA). The miRNAs were purified from exosomes, and unique molecular identifier (UMI) small RNA sequencing was performed. The random forest (RF) model was trained to predict potential biomarkers.

RESULTS

NTA demonstrated that nanoparticle concentration did not change after AMI, while nanoparticle size distribution significantly decreased. The CAD and AMI groups' miRNA expression profiles significantly differed from the healthy group's profile. The RF classifier could be used to distinguish the healthy group from the AMI group, but could not be used to distinguish the CAD group from the other groups, which caused a high classification error rate. Eighteen miRNAs were selected as biomarkers based on their RF classifier significance. The diagnostic accuracy of 18 miRNAs was evaluated using AUC values of 0.93, 0.87, and 0.75 to detect healthy controls, AMI, and CAD, respectively.

CONCLUSIONS

Nanoparticle diameter and the 18 miRNAs may serve as simple and accessible fingerprints for early AMI diagnosis.

摘要

背景

急性心肌梗死(AMI)是全球最常见的死亡原因之一。尽管在AMI诊断方面已取得相当大的进展,但仍迫切需要用于其预防和治疗的新型诊断生物标志物。功能性外泌体微小RNA(miRNA)在许多疾病中被认为是潜在的生物标志物。本研究的目的是鉴定具有早期AMI检测生物标志物潜力的特定血浆外泌体miRNA。

方法

从26例冠状动脉疾病(CAD)患者、55例AMI患者和37例健康对照者的血浆中分离出外泌体,并通过透射电子显微镜(TEM)、蛋白质印迹法和纳米颗粒跟踪分析(NTA)进行表征。从外泌体中纯化miRNA,并进行独特分子标识符(UMI)小RNA测序。训练随机森林(RF)模型以预测潜在的生物标志物。

结果

NTA表明,AMI后纳米颗粒浓度未改变,而纳米颗粒大小分布显著降低。CAD组和AMI组的miRNA表达谱与健康组的谱有显著差异。RF分类器可用于区分健康组和AMI组,但不能用于区分CAD组与其他组,这导致了较高的分类错误率。根据其RF分类器的重要性,选择了18种miRNA作为生物标志物。使用AUC值分别为0.93、0.87和0.75来评估18种miRNA检测健康对照者、AMI和CAD的诊断准确性。

结论

纳米颗粒直径和这18种miRNA可作为早期AMI诊断的简单且可获取的特征指标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c99/7940945/2dc76cd95238/atm-09-03-219-f1.jpg

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