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SARS-CoV-2 非结构蛋白 1(先导蛋白)的 H、C 和 N 骨架化学位移赋值。

H, C, and N backbone chemical-shift assignments of SARS-CoV-2 non-structural protein 1 (leader protein).

机构信息

Centre of Biomolecular Drug Research (BMWZ), Leibniz University Hannover, Schneiderberg 38, 30167, Hannover, Germany.

Group of NMR-Based Structural Chemistry, Helmholtz Centre for Infection Research, Inhoffenstrasse 7, 38124, Braunschweig, Germany.

出版信息

Biomol NMR Assign. 2021 Oct;15(2):287-295. doi: 10.1007/s12104-021-10019-6. Epub 2021 Mar 26.

Abstract

The current COVID-19 pandemic caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has become a worldwide health crisis, necessitating coordinated scientific research and urgent identification of new drug targets for treatment of COVID-19 lung disease. The covid19-nmr consortium seeks to support drug development by providing publicly accessible NMR data on the viral RNA elements and proteins. The SARS-CoV-2 genome comprises a single RNA of about 30 kb in length, in which 14 open reading frames (ORFs) have been annotated, and encodes approximately 30 proteins. The first two-thirds of the SARS-CoV-2 genome is made up of two large overlapping open-reading-frames (ORF1a and ORF1b) encoding a replicase polyprotein, which is subsequently cleaved to yield 16 so-called non-structural proteins. The non-structural protein 1 (Nsp1), which is considered to be a major virulence factor, suppresses host immune functions by associating with host ribosomal complexes at the very end of its C-terminus. Furthermore, Nsp1 facilitates initiation of viral RNA translation via an interaction of its N-terminal domain with the 5' untranslated region (UTR) of the viral RNA. Here, we report the near-complete backbone chemical-shift assignments of full-length SARS-CoV-2 Nsp1 (19.8 kDa), which reveal the domain organization, secondary structure and backbone dynamics of Nsp1, and which will be of value to further NMR-based investigations of both the biochemical and physiological functions of Nsp1.

摘要

由严重急性呼吸系统综合症冠状病毒 2(SARS-CoV-2)引起的当前 COVID-19 大流行已成为全球性健康危机,需要协调开展科学研究,并迫切确定 COVID-19 肺病治疗的新药物靶点。covid19-nmr 联盟旨在通过提供有关病毒 RNA 元件和蛋白质的公共可访问 NMR 数据来支持药物开发。SARS-CoV-2 基因组由大约 30kb 长的单链 RNA 组成,其中已注释了 14 个开放阅读框(ORF),并编码大约 30 种蛋白质。SARS-CoV-2 基因组的前三分之二由两个大型重叠的开放阅读框(ORF1a 和 ORF1b)组成,它们编码复制酶多蛋白,随后被切割成 16 种所谓的非结构蛋白。非结构蛋白 1(Nsp1)被认为是一种主要的毒力因子,通过其 C 末端的末端与宿主核糖体复合物结合来抑制宿主的免疫功能。此外,Nsp1 通过其 N 端结构域与病毒 RNA 的 5'非翻译区(UTR)相互作用,促进病毒 RNA 翻译的起始。在这里,我们报告了全长 SARS-CoV-2 Nsp1(19.8kDa)的完整骨架化学位移分配,这揭示了 Nsp1 的结构域组织、二级结构和骨架动力学,这将对进一步基于 NMR 的生化和生理功能研究 Nsp1 具有重要价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37ce/8481186/811cba05b42f/12104_2021_10019_Fig1_HTML.jpg

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