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人类γ疱疹病毒8型基因型全球分布的更新

Update of the global distribution of human gammaherpesvirus 8 genotypes.

作者信息

Lopes Amanda de Oliveira, Spitz Natália, Reis Christian Robson de Souza, de Paula Vanessa Salete

机构信息

Laboratory of Molecular Virology, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, 4365, Brasil Av., Manguinhos, Rio de Janeiro, RJ, 21040-360, Brazil.

Microbiology Department, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Pernambuco, 50670-420, Brazil.

出版信息

Sci Rep. 2021 Apr 7;11(1):7640. doi: 10.1038/s41598-021-87038-9.

Abstract

Human gammaherpesvirus 8 (HHV-8) consists of six major clades (A-F) based on the genetic sequence of the open reading frame (ORF)-K1. There are a few conflicting reports regarding the global distribution of the different HHV-8 genotypes. This study aimed to determine the global distribution of the different HHV-8 genotypes based on phylogenetic analysis of the ORF-K1 coding region using sequences published in the GenBank during 1997-2020 and construct a phylogenetic tree using the maximum likelihood algorithm with the GTR + I + G nucleotide substitution model. A total of 550 sequences from 38 countries/origins were analysed in this study. Genotypes A and C had similar global distributions and were prevalent in Africa and Europe. Genotype B was prevalent in Africa. Of the rare genotypes, genotype D was reported in East Asia and Oceania and genotype E in South America, while genotype F was prevalent in Africa. The highest genotypic diversity was reported in the American continent, with Brazil housing five HHV-8 genotypes (A, B, C, E, and F). In this study, we present update of the global distribution of HHV-8 genotypes, providing a basis for future epidemiological and evolutionary studies of HHV-8.

摘要

人类γ疱疹病毒8型(HHV - 8)根据开放阅读框(ORF)-K1的基因序列可分为六个主要分支(A - F)。关于不同HHV - 8基因型的全球分布,存在一些相互矛盾的报道。本研究旨在基于对1997 - 2020年期间在GenBank上公布的序列进行ORF - K1编码区的系统发育分析,确定不同HHV - 8基因型的全球分布,并使用最大似然算法和GTR + I + G核苷酸替换模型构建系统发育树。本研究共分析了来自38个国家/地区的550个序列。基因型A和C具有相似的全球分布,在非洲和欧洲较为普遍。基因型B在非洲流行。在罕见基因型中,基因型D在东亚和大洋洲被报道,基因型E在南美洲被报道,而基因型F在非洲流行。美洲大陆的基因型多样性最高,巴西存在五种HHV - 8基因型(A、B、C、E和F)。在本研究中,我们呈现了HHV - 8基因型全球分布的最新情况,为未来HHV - 8的流行病学和进化研究提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/996a/8026617/fab575be939d/41598_2021_87038_Fig1_HTML.jpg

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