Singh Harinder, Clarke Thomas, Brinkac Lauren, Greco Chris, Nelson Karen E
J. Craig Venter Institute, Rockville, MD, United States.
Noblis, Reston, VA, United States.
Front Microbiol. 2021 Mar 23;12:644861. doi: 10.3389/fmicb.2021.644861. eCollection 2021.
The human microbiome has been proposed as a tool to investigate different forensic questions, including for the identification of multiple personal information. However, the fragmented state of the publicly available data has retarded the development of analysis techniques and, therefore, the implementation of microbiomes as a forensic tool. To address this, we introduce the forensic microbiome database (FMD), which is a collection of 16S rRNA data and associated metadata generated from publicly available data. The raw data was further normalized and processed using a pipeline to create a standardized data set for downstream analysis. We present a website allowing for the exploration of geolocation signals in the FMD. The website allows users to investigate the taxonomic differences between microbiomes harvested from different locations and to predict the geolocation of their data based on the FMD sequences. All the results are presented in dynamic graphics to allow for a rapid and intuitive investigation of the taxonomic distributions underpinning the geolocation signals and prediction between locations. Apart from the forensic aspect, the database also allows exploration and comparison of microbiome samples from different geolocation and between different body sites. The goal of the FMD is to provide the scientific and non-scientific communities with data and tools to explore the possibilities of microbiomes to answer forensic questions and serve as a model for any future such databases.
人类微生物组已被提议作为一种工具,用于调查不同的法医学问题,包括识别多种个人信息。然而,公开可用数据的碎片化状态阻碍了分析技术的发展,因此也阻碍了微生物组作为法医学工具的应用。为了解决这个问题,我们引入了法医微生物组数据库(FMD),它是一个由公开可用数据生成的16S rRNA数据及相关元数据的集合。原始数据通过一个管道进一步标准化和处理,以创建用于下游分析的标准化数据集。我们提供了一个网站,用于探索FMD中的地理位置信号。该网站允许用户研究从不同地点采集的微生物组之间的分类差异,并根据FMD序列预测其数据的地理位置。所有结果都以动态图形呈现,以便快速直观地研究支撑地理位置信号和不同地点之间预测的分类分布。除了法医学方面,该数据库还允许探索和比较来自不同地理位置以及不同身体部位的微生物组样本。FMD的目标是为科学界和非科学界提供数据和工具,以探索微生物组回答法医学问题的可能性,并为未来任何此类数据库树立一个典范。