Shin Hanseob, Kim Yeonghyeon, Han Dukki, Hur Hor-Gil
School of Earth Sciences and Environmental Engineering, Gwangju Institute of Science and Technology, Gwangju, South Korea.
Department of Marine Molecular Bioscience, Gangneung-Wonju National University, Gangneung, South Korea.
Front Microbiol. 2021 Mar 23;12:645411. doi: 10.3389/fmicb.2021.645411. eCollection 2021.
High level carbapenem and extensively drug resistant (XDR) strain N7, which produces a variant of New Delhi metallo-β-lactamase (NDM-5), was isolated from the influent of the Jungnang wastewater treatment plant located on Han River, Seoul, South Korea. Phenotypic and genotypic resistances to carbapenem were tested using agar and broth dilution methods, and polymerase chain reaction. Whole-genome sequencing was performed to characterize the genetic structure of strain N7. strain N7, which harbors the gene, showed high level of carbapenem resistance at concentrations of doripenem (512 mg/L) and meropenem (256 mg/L), and XDR to 15 antibiotics. Based on the genomic sequence analysis, two plasmids, a hybrid IncHI2/N-type and an IncX3 type, were present. The former contains a cluster ( - --) bracketed by multi-insertional sequences, IS, IS, IS, and IS. The latter carries the following resistance genes: , , and , and . The chromosome, contig3, and contig5 also carry and , and and , respectively. Strain N7 also harbors virulence factors such as , , , , and . This study demonstrates the emergence of high level carbapenem resistant XDR strain N7 containing in aquatic environment, Seoul, South Korea. Due to the presence of mobile genetic elements, this strain could horizontally transfer resistance genes, including to environmental bacteria. Thus, it is necessary to conduct continuous surveillance for carbapenem resistance in various aquatic environments.
高水平碳青霉烯和广泛耐药(XDR)菌株N7,它产生一种新德里金属β-内酰胺酶(NDM-5)变体,是从位于韩国首尔汉江的中浪污水处理厂的进水口分离出来的。使用琼脂和肉汤稀释法以及聚合酶链反应对碳青霉烯的表型和基因型耐药性进行了测试。进行全基因组测序以表征菌株N7的遗传结构。携带该基因的菌株N7在多利培南(512mg/L)和美罗培南(256mg/L)浓度下表现出高水平的碳青霉烯耐药性,并且对15种抗生素具有广泛耐药性。基于基因组序列分析,存在两种质粒,一种是IncHI2/N型杂交质粒和一种IncX3型质粒。前者包含一个由多个插入序列IS、IS、IS和IS包围的簇(---)。后者携带以下耐药基因:、、和。染色体、重叠群3和重叠群5也分别携带和,以及和。菌株N7还携带诸如、、、和等毒力因子。本研究证明了在韩国首尔的水生环境中出现了含有高水平碳青霉烯耐药的XDR菌株N7。由于存在移动遗传元件,该菌株可能会将包括在内的耐药基因水平转移至环境细菌。因此,有必要对各种水生环境中的碳青霉烯耐药性进行持续监测。