Xu Juan, Guo Hao, Li Lirong, He Fang
School of Public Health, Hangzhou Medical College, Hangzhou, Zhejiang 310013, China.
Laboratory Medicine Center, Department of Clinical Laboratory, Zhejiang Provincial People's Hospital, Affiliated People's Hospital, Hangzhou Medical College, Hangzhou, Zhejiang 310014, China.
Comput Struct Biotechnol J. 2023 Jan 9;21:847-855. doi: 10.1016/j.csbj.2023.01.004. eCollection 2023.
is a leading cause of nosocomial infections. Carbapenem-resistant (CREC), which has been frequently isolated in recent years because of the widespread use of carbapenems, poses a significant challenge to clinical anti-infection treatment. In this study, a total of 27 CREC strains were identified from a set of 795 isolates collected over a two-year period from a tertiary hospital in China. Whole-genome sequencing revealed that 17 strains carried the gene, 5 strains carried the gene, 1 strain carried the gene, and the remaining 4 strains carried the gene. All 23 NDM-producing strains were resistant to all antibiotics except tigecycline, colistin, and cefiderocol. Nine different sequence types (STs) were identified, with ST410 and ST167 being the most prevalent. All of the genes were located on conjugatable plasmids. We identified five different plasmid replicon types ranging in size from 20 kb to 200 kb, with the IncX3-type plasmid, 46 kb in size, being a key factor in facilitating the horizontal transmission of the gene in . The structure surrounding the gene was relatively conserved and mainly contained the following structures: IS-IS-IS- - ---IS. However, the plasmid backbone structure was highly variable, which indicates that the gene has already spread horizontally among different types of plasmids. In addition, we discovered two copies of the gene in a single plasmid (pEC29-NDM-5), with an identical structure around the gene and the complete sequence of the class 1 integron. Our findings detail the prevalence of CREC in a tertiary hospital in China, and the emergence of multiple copies of the gene on a single plasmid needs our attention.
是医院感染的主要原因。耐碳青霉烯类肠杆菌科细菌(CREC)由于碳青霉烯类药物的广泛使用近年来经常被分离出来,给临床抗感染治疗带来了重大挑战。在本研究中,从中国一家三级医院在两年期间收集的795株分离株中总共鉴定出27株CREC菌株。全基因组测序显示,17株携带 基因,5株携带 基因,1株携带 基因,其余4株携带 基因。所有23株产NDM的菌株除对替加环素、黏菌素和头孢地尔外对所有抗生素均耐药。鉴定出9种不同的序列类型(STs),其中ST410和ST167最为常见。所有 基因均位于可接合质粒上。我们鉴定出五种不同的质粒复制子类型,大小从20 kb到200 kb不等,其中大小为46 kb的IncX3型质粒是促进 基因在 中水平传播的关键因素。 基因周围的结构相对保守,主要包含以下结构:IS-IS-IS- - ---IS。然而,质粒骨架结构高度可变,这表明 基因已经在不同类型的质粒之间水平传播。此外,我们在单个质粒(pEC29-NDM-5)中发现了 基因的两个拷贝,基因周围结构相同且有1类整合子的完整序列。我们的研究结果详细说明了中国一家三级医院中CREC的流行情况,单个质粒上 基因多拷贝的出现需要我们关注。