Department of Biomedical Sciences, University of Padua, Via Ugo Bassi 58/B, Padova 35131, Italy.
Database (Oxford). 2021 Apr 21;2021. doi: 10.1093/database/baab019.
APICURON is an open and freely accessible resource that tracks and credits the work of biocurators across multiple participating knowledgebases. Biocuration is essential to extract knowledge from research data and make it available in a structured and standardized way to the scientific community. However, processing biological data-mainly from literature-requires a huge effort that is difficult to attribute and quantify. APICURON collects biocuration events from third-party resources and aggregates this information, spotlighting biocurator contributions. APICURON promotes biocurator engagement implementing gamification concepts like badges, medals and leaderboards and at the same time provides a monitoring service for registered resources and for biocurators themselves. APICURON adopts a data model that is flexible enough to represent and track the majority of biocuration activities. Biocurators are identified through their Open Researcher and Contributor ID. The definition of curation events, scoring systems and rules for assigning badges and medals are resource-specific and easily customizable. Registered resources can transfer curation activities on the fly through a secure and robust Application Programming Interface (API). Here, we show how simple and effective it is to connect a resource to APICURON, describing the DisProt database of intrinsically disordered proteins as a use case. We believe APICURON will provide biological knowledgebases with a service to recognize and credit the effort of their biocurators, monitor their activity and promote curator engagement. Database URL: https://apicuron.org.
APICURON 是一个开放且免费访问的资源,用于跟踪和记录多个参与知识库的生物注释者的工作。生物注释对于从研究数据中提取知识并以结构化和标准化的方式将其提供给科学界至关重要。然而,处理生物数据——主要来自文献——需要大量的努力,而且很难归因和量化。APICURON 从第三方资源中收集生物注释事件,并汇总这些信息,突出生物注释者的贡献。APICURON 通过实施徽章、奖章和排行榜等游戏化概念来促进生物注释者的参与,同时为注册资源和生物注释者本身提供监控服务。APICURON 采用了一种灵活的数据模型,可以代表和跟踪大多数生物注释活动。生物注释者通过他们的开放研究人员和贡献者 ID 来识别。注释事件的定义、评分系统以及分配徽章和奖章的规则是特定于资源的,并且易于定制。注册资源可以通过安全且强大的应用程序编程接口 (API) 实时转移注释活动。在这里,我们展示了将资源连接到 APICURON 是多么简单和有效,描述了作为用例的内在无序蛋白质数据库 DisProt。我们相信,APICURON 将为生物知识库提供一种服务,以认可和表彰其生物注释者的努力,监控他们的活动并促进注释者的参与。数据库 URL:https://apicuron.org。