• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

人工智能在批量和单细胞 RNA 测序数据中促进精准肿瘤学。

Artificial Intelligence in Bulk and Single-Cell RNA-Sequencing Data to Foster Precision Oncology.

机构信息

Cancer Genomics and Bioinformatics Unit, IIGM-Italian Institute for Genomic Medicine, c/o IRCCS, Str. Prov.le 142, km 3.95, 10060 Candiolo, TO, Italy.

Candiolo Cancer Institute, FPO-IRCCS, Str. Prov.le 142, km 3.95, 10060 Candiolo, TO, Italy.

出版信息

Int J Mol Sci. 2021 Apr 27;22(9):4563. doi: 10.3390/ijms22094563.

DOI:10.3390/ijms22094563
PMID:33925407
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8123853/
Abstract

Artificial intelligence, or the discipline of developing computational algorithms able to perform tasks that requires human intelligence, offers the opportunity to improve our idea and delivery of precision medicine. Here, we provide an overview of artificial intelligence approaches for the analysis of large-scale RNA-sequencing datasets in cancer. We present the major solutions to disentangle inter- and intra-tumor heterogeneity of transcriptome profiles for an effective improvement of patient management. We outline the contributions of learning algorithms to the needs of cancer genomics, from identifying rare cancer subtypes to personalizing therapeutic treatments.

摘要

人工智能,或开发能够执行需要人类智能的计算算法的学科,为改善我们的精准医疗理念和实践提供了机会。在这里,我们概述了人工智能方法在癌症大规模 RNA 测序数据集分析中的应用。我们提出了主要的解决方案,以解卷积转录组图谱的肿瘤内和肿瘤间异质性,从而有效改善患者管理。我们概述了学习算法对癌症基因组学需求的贡献,从识别罕见的癌症亚型到个性化治疗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1575/8123853/afe6ed1e4969/ijms-22-04563-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1575/8123853/7bf8da160bed/ijms-22-04563-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1575/8123853/a9f8e3322f7a/ijms-22-04563-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1575/8123853/afe6ed1e4969/ijms-22-04563-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1575/8123853/7bf8da160bed/ijms-22-04563-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1575/8123853/a9f8e3322f7a/ijms-22-04563-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1575/8123853/afe6ed1e4969/ijms-22-04563-g003.jpg

相似文献

1
Artificial Intelligence in Bulk and Single-Cell RNA-Sequencing Data to Foster Precision Oncology.人工智能在批量和单细胞 RNA 测序数据中促进精准肿瘤学。
Int J Mol Sci. 2021 Apr 27;22(9):4563. doi: 10.3390/ijms22094563.
2
Clinical Perspectives of Single-Cell RNA Sequencing.单细胞 RNA 测序的临床视角。
Biomolecules. 2021 Aug 6;11(8):1161. doi: 10.3390/biom11081161.
3
Applications of single-cell and bulk RNA sequencing in onco-immunology.单细胞和批量RNA测序在肿瘤免疫学中的应用。
Eur J Cancer. 2021 May;149:193-210. doi: 10.1016/j.ejca.2021.03.005. Epub 2021 Apr 15.
4
RNA Sequencing of the Tumor Microenvironment in Precision Cancer Immunotherapy.精准癌症免疫治疗中肿瘤微环境的RNA测序
Trends Cancer. 2019 Mar;5(3):149-156. doi: 10.1016/j.trecan.2019.02.006. Epub 2019 Mar 8.
5
"Zooming in" on Glioblastoma: Understanding Tumor Heterogeneity and its Clinical Implications in the Era of Single-Cell Ribonucleic Acid Sequencing.“放大”胶质母细胞瘤:单细胞 RNA 测序时代对肿瘤异质性及其临床意义的理解。
Neurosurgery. 2021 Feb 16;88(3):477-486. doi: 10.1093/neuros/nyaa305.
6
Artificial Intelligence for Precision Oncology.人工智能在精准肿瘤学中的应用。
Adv Exp Med Biol. 2022;1361:249-268. doi: 10.1007/978-3-030-91836-1_14.
7
Towards artificial intelligence to multi-omics characterization of tumor heterogeneity in esophageal cancer.迈向用于食管癌肿瘤异质性多组学表征的人工智能
Semin Cancer Biol. 2023 Jun;91:35-49. doi: 10.1016/j.semcancer.2023.02.009. Epub 2023 Mar 1.
8
Leveraging single-cell sequencing to classify and characterize tumor subgroups in bulk RNA-sequencing data.利用单细胞测序对批量 RNA 测序数据中的肿瘤亚群进行分类和特征分析。
J Neurooncol. 2024 Jul;168(3):515-524. doi: 10.1007/s11060-024-04710-6. Epub 2024 May 29.
9
Precision medicine and artificial intelligence: overview and relevance to reproductive medicine.精准医学与人工智能:概述及其与生殖医学的相关性。
Fertil Steril. 2020 Nov;114(5):908-913. doi: 10.1016/j.fertnstert.2020.09.156.
10
Artificial intelligence-based multi-omics analysis fuels cancer precision medicine.基于人工智能的多组学分析推动癌症精准医学发展。
Semin Cancer Biol. 2023 Jan;88:187-200. doi: 10.1016/j.semcancer.2022.12.009. Epub 2022 Dec 31.

引用本文的文献

1
Cancer genomics and bioinformatics in Latin American countries: applications, challenges, and perspectives.拉丁美洲国家的癌症基因组学与生物信息学:应用、挑战与前景
Front Oncol. 2025 Jul 9;15:1584178. doi: 10.3389/fonc.2025.1584178. eCollection 2025.
2
Emerging Techniques of Translational Research in Immuno-Oncology: A Focus on Non-Small Cell Lung Cancer.免疫肿瘤学转化研究的新兴技术:聚焦非小细胞肺癌
Cancers (Basel). 2025 Jul 4;17(13):2244. doi: 10.3390/cancers17132244.
3
Research Trends and Dynamics in Single-cell RNA Sequencing for Musculoskeletal Diseases: A Scientometric and Visualization Study.

本文引用的文献

1
The Multifaceted Role and Utility of MicroRNAs in Indolent B-Cell Non-Hodgkin Lymphomas.微小RNA在惰性B细胞非霍奇金淋巴瘤中的多方面作用及应用
Biomedicines. 2021 Mar 25;9(4):333. doi: 10.3390/biomedicines9040333.
2
A first-generation pediatric cancer dependency map.第一代儿科癌症依赖图谱。
Nat Genet. 2021 Apr;53(4):529-538. doi: 10.1038/s41588-021-00819-w. Epub 2021 Mar 22.
3
Pathway-based classification of glioblastoma uncovers a mitochondrial subtype with therapeutic vulnerabilities.基于通路的胶质母细胞瘤分类揭示了一种具有治疗易感性的线粒体亚型。
肌肉骨骼疾病单细胞RNA测序的研究趋势与动态:一项科学计量与可视化研究
Int J Med Sci. 2025 Jan 1;22(3):528-550. doi: 10.7150/ijms.104697. eCollection 2025.
4
Fusion Genes in Myeloid Malignancies.髓系恶性肿瘤中的融合基因
Cancers (Basel). 2024 Dec 3;16(23):4055. doi: 10.3390/cancers16234055.
5
Comprehensive analysis of single-cell and bulk RNA sequencing reveals postoperative progression markers for non-muscle invasive bladder cancer and predicts responses to immunotherapy.单细胞和批量RNA测序的综合分析揭示了非肌肉浸润性膀胱癌的术后进展标志物,并预测了免疫治疗反应。
Discov Oncol. 2024 Nov 13;15(1):649. doi: 10.1007/s12672-024-01548-2.
6
Advancements in technology for characterizing the tumor immune microenvironment.肿瘤免疫微环境特征分析技术的进展
Int J Biol Sci. 2024 Mar 25;20(6):2151-2167. doi: 10.7150/ijbs.92525. eCollection 2024.
7
Emerging applications of single-cell profiling in precision medicine of atherosclerosis.单细胞谱分析在动脉粥样硬化精准医学中的新兴应用。
J Transl Med. 2024 Jan 23;22(1):97. doi: 10.1186/s12967-023-04629-y.
8
Single-Cell RNA Sequencing: Technological Progress and Biomedical Application in Cancer Research.单细胞 RNA 测序:技术进展及在癌症研究中的生物医学应用。
Mol Biotechnol. 2024 Jul;66(7):1497-1519. doi: 10.1007/s12033-023-00777-0. Epub 2023 Jun 15.
9
Progress of the "Molecular Informatics" Section in 2022.2022 年“分子信息学”分会进展情况。
Int J Mol Sci. 2023 May 29;24(11):9442. doi: 10.3390/ijms24119442.
10
Artificial Intelligence-Assisted Transcriptomic Analysis to Advance Cancer Immunotherapy.人工智能辅助转录组分析推动癌症免疫治疗
J Clin Med. 2023 Feb 6;12(4):1279. doi: 10.3390/jcm12041279.
Nat Cancer. 2021 Feb;2(2):141-156. doi: 10.1038/s43018-020-00159-4. Epub 2021 Jan 11.
4
A tumor microenvironment-specific gene expression signature predicts chemotherapy resistance in colorectal cancer patients.一种肿瘤微环境特异性基因表达特征可预测结直肠癌患者的化疗耐药性。
NPJ Precis Oncol. 2021 Feb 12;5(1):7. doi: 10.1038/s41698-021-00142-x.
5
Initialization is critical for preserving global data structure in both t-SNE and UMAP.初始化对于在t-SNE和UMAP中保存全局数据结构至关重要。
Nat Biotechnol. 2021 Feb;39(2):156-157. doi: 10.1038/s41587-020-00809-z. Epub 2021 Feb 1.
6
Global computational alignment of tumor and cell line transcriptional profiles.肿瘤和细胞系转录谱的全局计算比对。
Nat Commun. 2021 Jan 4;12(1):22. doi: 10.1038/s41467-020-20294-x.
7
A Topic Modeling Analysis of TCGA Breast and Lung Cancer Transcriptomic Data.对TCGA乳腺癌和肺癌转录组数据的主题建模分析。
Cancers (Basel). 2020 Dec 16;12(12):3799. doi: 10.3390/cancers12123799.
8
Identification of Metabolism-Associated Prostate Cancer Subtypes and Construction of a Prognostic Risk Model.代谢相关前列腺癌亚型的鉴定及预后风险模型的构建
Front Oncol. 2020 Nov 26;10:598801. doi: 10.3389/fonc.2020.598801. eCollection 2020.
9
A meta-learning approach for genomic survival analysis.一种用于基因组生存分析的元学习方法。
Nat Commun. 2020 Dec 11;11(1):6350. doi: 10.1038/s41467-020-20167-3.
10
ECMarker: interpretable machine learning model identifies gene expression biomarkers predicting clinical outcomes and reveals molecular mechanisms of human disease in early stages.ECMarker:可解释的机器学习模型,用于识别预测临床结果的基因表达生物标志物,并揭示人类疾病早期的分子机制。
Bioinformatics. 2021 May 23;37(8):1115-1124. doi: 10.1093/bioinformatics/btaa935.