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多组学大数据分析挑战:提高对人工智能评估解读的信心。

Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments.

机构信息

Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27606, United States.

Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina 27606, United States.

出版信息

Anal Chem. 2021 Jun 8;93(22):7763-7773. doi: 10.1021/acs.analchem.0c04850. Epub 2021 May 24.

DOI:10.1021/acs.analchem.0c04850
PMID:34029068
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8465926/
Abstract

The need for holistic molecular measurements to better understand disease initiation, development, diagnosis, and therapy has led to an increasing number of multiomic analyses. The wealth of information available from multiomic assessments, however, requires both the evaluation and interpretation of extremely large data sets, limiting analysis throughput and ease of adoption. Computational methods utilizing artificial intelligence (AI) provide the most promising way to address these challenges, yet despite the conceptual benefits of AI and its successful application in singular omic studies, the widespread use of AI in multiomic studies remains limited. Here, we discuss present and future capabilities of AI techniques in multiomic studies while introducing analytical checks and balances to validate the computational conclusions.

摘要

为了更好地理解疾病的发生、发展、诊断和治疗,需要进行整体分子测量,这导致了越来越多的组学分析。然而,多组学评估所提供的丰富信息既需要评估,也需要解释极其庞大的数据集,这限制了分析的通量和采用的便利性。利用人工智能 (AI) 的计算方法为解决这些挑战提供了最有希望的途径,但尽管 AI 具有概念上的优势,并且在单一组学研究中得到了成功的应用,AI 在多组学研究中的广泛应用仍然受到限制。在这里,我们讨论了 AI 技术在多组学研究中的现有和未来能力,同时引入了分析性的制衡措施来验证计算得出的结论。

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本文引用的文献

1
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Nat Biotechnol. 2022 Aug;40(8):1231-1240. doi: 10.1038/s41587-022-01302-5. Epub 2022 May 19.
2
Protein Abundance Prediction Through Machine Learning Methods.通过机器学习方法进行蛋白质丰度预测
J Mol Biol. 2021 Nov 5;433(22):167267. doi: 10.1016/j.jmb.2021.167267. Epub 2021 Sep 23.
3
Deep neural networks for inferring binding sites of RNA-binding proteins by using distributed representations of RNA primary sequence and secondary structure.利用 RNA 一级序列和二级结构的分布式表示来推断 RNA 结合蛋白结合位点的深度神经网络。
BMC Genomics. 2020 Dec 17;21(Suppl 13):866. doi: 10.1186/s12864-020-07239-w.
4
Dissemination and analysis of the quality assurance (QA) and quality control (QC) practices of LC-MS based untargeted metabolomics practitioners.基于 LC-MS 的非靶向代谢组学从业者的质量保证(QA)和质量控制(QC)实践的传播和分析。
Metabolomics. 2020 Oct 12;16(10):113. doi: 10.1007/s11306-020-01728-5.
5
Imputing single-cell RNA-seq data by considering cell heterogeneity and prior expression of dropouts.考虑细胞异质性和缺失值先前表达来推断单细胞 RNA-seq 数据。
J Mol Cell Biol. 2021 Apr 10;13(1):29-40. doi: 10.1093/jmcb/mjaa052.
6
A systematic evaluation of single-cell RNA-sequencing imputation methods.单细胞 RNA-seq 数据插补方法的系统评价
Genome Biol. 2020 Aug 27;21(1):218. doi: 10.1186/s13059-020-02132-x.
7
Biological and Medical Importance of Cellular Heterogeneity Deciphered by Single-Cell RNA Sequencing.单细胞 RNA 测序解析的细胞异质性的生物学和医学重要性。
Cells. 2020 Jul 22;9(8):1751. doi: 10.3390/cells9081751.
8
Why the metabolism field risks missing out on the AI revolution.为何新陈代谢领域可能错失人工智能革命的机遇。
Nat Metab. 2019 Oct;1(10):929-930. doi: 10.1038/s42255-019-0133-9.
9
Proper imputation of missing values in proteomics datasets for differential expression analysis.蛋白质组学数据集缺失值的恰当推断用于差异表达分析。
Brief Bioinform. 2021 May 20;22(3). doi: 10.1093/bib/bbaa112.
10
Reproducible molecular networking of untargeted mass spectrometry data using GNPS.使用 GNPS 实现无靶向质谱数据的可重现分子网络分析。
Nat Protoc. 2020 Jun;15(6):1954-1991. doi: 10.1038/s41596-020-0317-5. Epub 2020 May 13.