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基于深度学习的组织切片视网膜变性分类。

Classifying Retinal Degeneration in Histological Sections Using Deep Learning.

机构信息

Graduate School of Biomedical Engineering, University of New South Wales, Kensington, NSW, Australia.

School of Computer Science and Engineering, University of New South Wales, Kensington, NSW, Australia.

出版信息

Transl Vis Sci Technol. 2021 Jun 1;10(7):9. doi: 10.1167/tvst.10.7.9.

Abstract

PURPOSE

Artificial intelligence (AI) techniques are increasingly being used to classify retinal diseases. In this study we investigated the ability of a convolutional neural network (CNN) in categorizing histological images into different classes of retinal degeneration.

METHODS

Images were obtained from a chemically induced feline model of monocular retinal dystrophy and split into training and testing sets. The training set was graded for the level of retinal degeneration and used to train various CNN architectures. The testing set was evaluated through the best architecture and graded by six observers. Comparisons between model and observer classifications, and interobserver variability were measured. Finally, the effects of using less training images or images containing half the presentable context were investigated.

RESULTS

The best model gave weighted-F1 scores in the range 85% to 90%. Cohen kappa scores reached up to 0.86, indicating high agreement between the model and observers. Interobserver variability was consistent with the model-observer variability in the model's ability to match predictions with the observers. Image context restriction resulted in model performance reduction by up to 6% and at least one training set size resulted in a model performance reduction of 10% compared to the original size.

CONCLUSIONS

Detecting the presence and severity of up to three classes of retinal degeneration in histological data can be reliably achieved with a deep learning classifier.

TRANSLATIONAL RELEVANCE

This work lays the foundations for future AI models which could aid in the evaluation of more intricate changes occurring in retinal degeneration, particularly in other types of clinically derived image data.

摘要

目的

人工智能(AI)技术越来越多地被用于对视网膜疾病进行分类。本研究旨在调查卷积神经网络(CNN)在将组织学图像分类为不同类型的视网膜变性中的能力。

方法

从化学诱导的猫单眼视网膜营养不良模型中获取图像,并将其分为训练集和测试集。训练集根据视网膜变性的程度进行分级,并用于训练各种 CNN 架构。使用最佳架构对测试集进行评估,并由六名观察者进行分级。比较模型和观察者的分类、以及观察者之间的可变性。最后,研究了使用较少训练图像或仅包含一半现有上下文的图像的效果。

结果

最佳模型的加权-F1 评分在 85%到 90%之间。科恩kappa 评分高达 0.86,表明模型与观察者之间具有高度一致性。观察者之间的可变性与模型在与观察者匹配预测方面的能力与观察者之间的可变性一致。图像上下文限制导致模型性能降低高达 6%,与原始大小相比,至少一个训练集大小导致模型性能降低 10%。

结论

使用深度学习分类器可以可靠地检测组织学数据中存在和严重程度高达三种类型的视网膜变性。

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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d88/8196406/71777dff96e0/tvst-10-7-9-f001.jpg

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