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纤维素酶的物理限制与功能可塑性

Physical constraints and functional plasticity of cellulases.

作者信息

Kari Jeppe, Molina Gustavo A, Schaller Kay S, Schiano-di-Cola Corinna, Christensen Stefan J, Badino Silke F, Sørensen Trine H, Røjel Nanna S, Keller Malene B, Sørensen Nanna Rolsted, Kolaczkowski Bartlomiej, Olsen Johan P, Krogh Kristian B R M, Jensen Kenneth, Cavaleiro Ana M, Peters Günther H J, Spodsberg Nikolaj, Borch Kim, Westh Peter

机构信息

Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Denmark.

Novozymes A/S, Bagsværd, Denmark.

出版信息

Nat Commun. 2021 Jun 22;12(1):3847. doi: 10.1038/s41467-021-24075-y.

Abstract

Enzyme reactions, both in Nature and technical applications, commonly occur at the interface of immiscible phases. Nevertheless, stringent descriptions of interfacial enzyme catalysis remain sparse, and this is partly due to a shortage of coherent experimental data to guide and assess such work. In this work, we produced and kinetically characterized 83 cellulases, which revealed a conspicuous linear free energy relationship (LFER) between the substrate binding strength and the activation barrier. The scaling occurred despite the investigated enzymes being structurally and mechanistically diverse. We suggest that the scaling reflects basic physical restrictions of the hydrolytic process and that evolutionary selection has condensed cellulase phenotypes near the line. One consequence of the LFER is that the activity of a cellulase can be estimated from its substrate binding strength, irrespectively of structural and mechanistic details, and this appears promising for in silico selection and design within this industrially important group of enzymes.

摘要

在自然界和技术应用中,酶促反应通常发生在互不相溶的相界面处。然而,对界面酶催化的严格描述仍然很少,部分原因是缺乏连贯的实验数据来指导和评估此类工作。在这项研究中,我们制备了83种纤维素酶并对其进行了动力学表征,结果揭示了底物结合强度与活化能垒之间存在明显的线性自由能关系(LFER)。尽管所研究的酶在结构和机制上存在差异,但这种标度关系依然存在。我们认为,这种标度反映了水解过程的基本物理限制,并且进化选择使纤维素酶表型在这条线附近聚集。LFER的一个结果是,可以根据纤维素酶的底物结合强度来估计其活性,而无需考虑结构和机制细节,这对于在这一具有重要工业意义的酶类中进行计算机筛选和设计似乎很有前景。

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