从关键肠道细菌中鉴定一种新型胆汁盐水解酶

Identifying a Novel Bile Salt Hydrolase from the Keystone Gut Bacterium .

作者信息

Déjean Guillaume, Tudela Héloïse, Bruno Lisa, Kissi Déborah, Rawadi Georges, Claus Sandrine P

机构信息

Ysopia Bioscience, 17 Place de la Bourse, 33076 Bordeaux, France.

ImmunoConcEpT, 146 rue Léo Saignat, 33076 Bordeaux, France.

出版信息

Microorganisms. 2021 Jun 9;9(6):1252. doi: 10.3390/microorganisms9061252.

Abstract

are human gut dwelling bacteria that have been proposed as key members of the gut microbiome, regulating energy balance and adiposity of their host. We formerly identified that a novel strain of (strain DSM33407) boosted microbiota diversity and stimulated deconjugation of the primary bile acid taurocholic acid in human samples. However, there is no description of a bile salt hydrolase (BSH) protein carried in the genome of . Here, we identified and cloned a protein from genome that carries a potent BSH activity, which preferentially deconjugates glycine-conjugated bile acids. We then retrieved 14,319 putative BSH sequences from the NCBI database and filtered them using the UHGP database to collect a total of 6701 sequences that were used to build the most comprehensive phylogenetic tree of BSH-related enzymes identified in the human microbiome so far. This phylogenetic tree revealed that BSH amino acid sequence clusters away from others with a threshold of 70% identity. This is therefore the first description of BSH protein, which may be involved in its unique role within the human gut microbial ecosystem.

摘要

是栖息于人类肠道的细菌,被认为是肠道微生物群的关键成员,可调节宿主的能量平衡和肥胖状况。我们之前鉴定出一种新型的(菌株DSM33407)可提高微生物群多样性,并刺激人类样本中初级胆汁酸牛磺胆酸的去结合作用。然而,关于其基因组中携带的胆汁盐水解酶(BSH)蛋白尚无描述。在此,我们从其基因组中鉴定并克隆了一种具有强大BSH活性的蛋白,该蛋白优先使甘氨酸结合的胆汁酸去结合。然后,我们从NCBI数据库中检索了14319个推定的BSH序列,并使用UHGP数据库对其进行筛选,共收集了6701个序列,用于构建迄今为止在人类微生物组中鉴定出的最全面的BSH相关酶系统发育树。该系统发育树显示,其BSH氨基酸序列以70%的同一性阈值与其他序列聚类。因此,这是对其BSH蛋白的首次描述,该蛋白可能在人类肠道微生物生态系统中发挥独特作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c738/8228234/1e4f6c4bb466/microorganisms-09-01252-g001.jpg

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