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用于预测颈部淋巴结转移的甲状腺乳头状癌放射基因组学分析:一项初步研究

Radiogenomic Analysis of Papillary Thyroid Carcinoma for Prediction of Cervical Lymph Node Metastasis: A Preliminary Study.

作者信息

Tong Yuyang, Sun Peixuan, Yong Juanjuan, Zhang Hongbo, Huang Yunxia, Guo Yi, Yu Jinhua, Zhou Shichong, Wang Yulong, Wang Yu, Ji Qinghai, Wang Yuanyuan, Chang Cai

机构信息

Department of Ultrasound, Fudan University Shanghai Cancer Center, Shanghai, China.

Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.

出版信息

Front Oncol. 2021 Jun 29;11:682998. doi: 10.3389/fonc.2021.682998. eCollection 2021.

Abstract

BACKGROUND

Papillary thyroid carcinoma (PTC) is characterized by frequent metastases to cervical lymph nodes (CLNs), and the presence of lymph node metastasis at diagnosis has a significant impact on the surgical approach. Therefore, we established a radiomic signature to predict the CLN status of PTC patients using preoperative thyroid ultrasound, and investigated the association between the radiomic features and underlying molecular characteristics of PTC tumors.

METHODS

In total, 270 patients were enrolled in this prospective study, and radiomic features were extracted according to multiple guidelines. A radiomic signature was built with selected features in the training cohort and validated in the validation cohort. The total protein extracted from tumor samples was analyzed with LC/MS and iTRAQ technology. Gene modules acquired by clustering were chosen for their diagnostic significance. A radiogenomic map linking radiomic features to gene modules was constructed with the Spearman correlation matrix. Genes in modules related to metastasis were extracted for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses, and a protein-protein interaction (PPI) network was built to identify the hub genes in the modules. Finally, the screened hub genes were validated by immunohistochemistry analysis.

RESULTS

The radiomic signature showed good performance for predicting CLN status in training and validation cohorts, with area under curve of 0.873 and 0.831 respectively. A radiogenomic map was created with nine significant correlations between radiomic features and gene modules, and two of them had higher correlation coefficient. Among these, MEmeganta representing the upregulation of telomere maintenance telomerase and cell-cell adhesion was correlated with 'Rectlike' and 'deviation ratio of tumor tissue and normal thyroid gland' which reflect the margin and the internal echogenicity of the tumor, respectively. MEblue capturing cell-cell adhesion and glycolysis was associated with feature 'minimum calcification area' which measures the punctate calcification. The hub genes of the two modules were identified by protein-protein interaction network. Immunohistochemistry validated that LAMC1 and THBS1 were differently expressed in metastatic and non-metastatic tissues (p=0.003; p=0.002). And LAMC1 was associated with feature 'Rectlike' and 'deviation ratio of tumor and normal thyroid gland' (p<0.001; p<0.001); THBS1 was correlated with 'minimum calcification area' (p<0.001).

CONCLUSIONS

The radiomic signature proposed here has the potential to noninvasively predict the CLN status in PTC patients. Merging imaging phenotypes with genomic data could allow noninvasive identification of the molecular properties of PTC tumors, which might support clinical decision making and personalized management.

摘要

背景

甲状腺乳头状癌(PTC)的特征是频繁转移至颈部淋巴结(CLN),且诊断时存在淋巴结转移对手术方式有重大影响。因此,我们建立了一种放射组学特征,用于利用术前甲状腺超声预测PTC患者的CLN状态,并研究放射组学特征与PTC肿瘤潜在分子特征之间的关联。

方法

本前瞻性研究共纳入270例患者,根据多项指南提取放射组学特征。在训练队列中用选定特征构建放射组学特征,并在验证队列中进行验证。用液相色谱/质谱联用(LC/MS)和同位素标记相对和绝对定量(iTRAQ)技术分析从肿瘤样本中提取的总蛋白。选择通过聚类获得的基因模块因其具有诊断意义。用Spearman相关矩阵构建将放射组学特征与基因模块联系起来的放射基因组图谱。提取与转移相关模块中的基因进行基因本体(GO)和京都基因与基因组百科全书(KEGG)通路富集分析,并构建蛋白质-蛋白质相互作用(PPI)网络以识别模块中的枢纽基因。最后,通过免疫组织化学分析验证筛选出的枢纽基因。

结果

放射组学特征在训练和验证队列中对预测CLN状态表现良好,曲线下面积分别为0.873和0.831。创建了一个放射基因组图谱,其中放射组学特征与基因模块之间有9个显著相关性,其中两个相关性系数较高。其中,代表端粒维持端粒酶上调和细胞-细胞黏附的MEmeganta与分别反映肿瘤边缘和内部回声性的“Rectlike”和“肿瘤组织与正常甲状腺的偏差率”相关。捕获细胞-细胞黏附和糖酵解的MEblue与测量点状钙化的特征“最小钙化面积”相关。通过蛋白质-蛋白质相互作用网络识别了两个模块的枢纽基因。免疫组织化学验证了层黏连蛋白γ1(LAMC1)和血小板反应蛋白1(THBS1)在转移和非转移组织中的表达不同(p = 0.003;p = 0.002)。并且LAMC1与特征“Rectlike”和“肿瘤与正常甲状腺的偏差率”相关(p < 0.001;p < 0.001);THBS1与“最小钙化面积”相关(p < 0.001)。

结论

本文提出的放射组学特征有可能无创地预测PTC患者的CLN状态。将影像表型与基因组数据相结合可以无创地识别PTC肿瘤的分子特性,这可能支持临床决策和个性化管理。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4d4/8276635/6bca36f872b3/fonc-11-682998-g001.jpg

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