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Ras 相关蛋白 Rap1b 在泛癌中的预后和免疫作用。

Prognostic and immunological role of Ras-related protein Rap1b in pan-cancer.

机构信息

Department of Gastroenterology, The Second Affiliated Hospital of Nanjing University of Chinese Medicine, Nanjing, China.

Department of Traditional Chinese Medicine, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.

出版信息

Bioengineered. 2021 Dec;12(1):4828-4840. doi: 10.1080/21655979.2021.1955559.

Abstract

Ras-related Protein , a GTP-binding protein belonging to the proximal RAS, which affects tumor progression through regulating tumor cell proliferation, invasion and participates in the functions of various immune cells. However, the potential roles and mechanisms of in tumor progression and immunology remains unclear. In this study, we systematically analyzed the pan-cancer expression and prognostic correlation of based on GTEX, CCLE, Oncomine, PrognoScan, Kaplan-Meier plotters and TCGA databases. The potential correlations of Rap1b with immune infiltration were revealed via TIMER and TCGA database. SangerBox database was used to analyzed the correlations between expression and immune checkpoint (ICP), tumor mutational burden (TMB), microsatellite instability (MSI), mismatch repairs (MMRs) and DNA methylation. The results indicated that the expression level of varies in different tumors. Meanwhile, the expression level of strongly correlated with prognosis in patients with tumors, higher expression of usually was linked to poor prognosis in different datasets. was correlated closely with tumor immunity and interacted with various immune cells in different types of cancers. In addition, there were significant positive correlations between Rap1b expression and ICP, TMB, MSI, MMRs and DNA methylation. In conclusion, the results of pan-cancer analysis showed that the abnormal expression was related to poor prognosis and tumor immune infiltration in different cancers. Furthermore, gene may be used as a potential biomarker of clinical tumor prognosis.

摘要

Ras 相关蛋白(Ras-related protein),一种属于近端 Ras 的 GTP 结合蛋白,通过调节肿瘤细胞增殖、侵袭来影响肿瘤进展,并参与各种免疫细胞的功能。然而,在肿瘤进展和免疫学中 的潜在作用和机制仍不清楚。在这项研究中,我们系统地分析了基于 GTEX、CCLE、Oncomine、PrognoScan、Kaplan-Meier plotters 和 TCGA 数据库的 Ras 相关蛋白在泛癌症中的表达和预后相关性。通过 TIMER 和 TCGA 数据库揭示了 Rap1b 与免疫浸润的潜在相关性。SangerBox 数据库用于分析 Rap1b 表达与免疫检查点(ICP)、肿瘤突变负担(TMB)、微卫星不稳定性(MSI)、错配修复(MMRs)和 DNA 甲基化之间的相关性。结果表明,Ras 相关蛋白在不同肿瘤中的表达水平不同。同时,Ras 相关蛋白的表达水平与肿瘤患者的预后密切相关,在不同数据集,Ras 相关蛋白高表达通常与预后不良相关。Ras 相关蛋白与肿瘤免疫密切相关,并在不同类型的癌症中与各种免疫细胞相互作用。此外,Rap1b 表达与 ICP、TMB、MSI、MMRs 和 DNA 甲基化之间存在显著的正相关。总之,泛癌症分析的结果表明,异常的 Ras 相关蛋白表达与不同癌症的不良预后和肿瘤免疫浸润有关。此外,Ras 相关蛋白基因可能作为临床肿瘤预后的潜在生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42bc/8806554/1908d307f1c1/KBIE_A_1955559_F0001_OC.jpg

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