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通过社区驱动的敏捷设计来推动 FAIR 数据:脊髓损伤的开放数据通用资源库(odc-sci.org)。

Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org).

机构信息

Weill Institute for Neurosciences, Brain and Spinal Injury Center, Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA.

Department of Neuroscience, University of California, San Diego, San Diego, CA, USA.

出版信息

Neuroinformatics. 2022 Jan;20(1):203-219. doi: 10.1007/s12021-021-09533-8. Epub 2021 Aug 4.

Abstract

The past decade has seen accelerating movement from data protectionism in publishing toward open data sharing to improve reproducibility and translation of biomedical research. Developing data sharing infrastructures to meet these new demands remains a challenge. One model for data sharing involves simply attaching data, irrespective of its type, to publisher websites or general use repositories. However, some argue this creates a 'data dump' that does not promote the goals of making data Findable, Accessible, Interoperable and Reusable (FAIR). Specialized data sharing communities offer an alternative model where data are curated by domain experts to make it both open and FAIR. We report on our experiences developing one such data-sharing ecosystem focusing on 'long-tail' preclinical data, the Open Data Commons for Spinal Cord Injury (odc-sci.org). ODC-SCI was developed with community-based agile design requirements directly pulled from a series of workshops with multiple stakeholders (researchers, consumers, non-profit funders, governmental agencies, journals, and industry members). ODC-SCI focuses on heterogeneous tabular data collected by preclinical researchers including bio-behaviour, histopathology findings and molecular endpoints. This has led to an example of a specialized neurocommons that is well-embraced by the community it aims to serve. In the present paper, we provide a review of the community-based design template and describe the adoption by the community including a high-level review of current data assets, publicly released datasets, and web analytics. Although odc-sci.org is in its late beta stage of development, it represents a successful example of a specialized data commons that may serve as a model for other fields.

摘要

在过去的十年中,出版界从数据保护主义向开放数据共享加速转变,以提高生物医学研究的可重复性和可转化性。开发满足这些新需求的数据共享基础设施仍然是一个挑战。一种数据共享模式涉及简单地将数据附加到发布者网站或通用存储库上,而不考虑其类型。然而,一些人认为这会创建一个“数据垃圾场”,而无法促进使数据可发现、可访问、可互操作和可重复使用(FAIR)的目标。专门的数据共享社区提供了另一种模式,即由领域专家对数据进行策展,使其既开放又符合 FAIR 原则。我们报告了我们在开发专注于“长尾”临床前数据的共享生态系统方面的经验,该生态系统是开放脊髓损伤数据通用资源(odc-sci.org)。ODC-SCI 是根据社区的敏捷设计要求开发的,这些要求直接来自与多个利益相关者(研究人员、消费者、非营利性资助者、政府机构、期刊和行业成员)举行的一系列研讨会。ODC-SCI 专注于临床前研究人员收集的异构表格数据,包括生物行为、组织病理学发现和分子终点。这导致了一个专门的神经共享社区的例子,该社区得到了它所服务的社区的广泛支持。在本文中,我们提供了对基于社区的设计模板的回顾,并描述了社区的采用情况,包括对当前数据资产、公开发布的数据集和网络分析的高级回顾。尽管 odc-sci.org 处于其后期测试阶段,但它代表了一个专门的数据共享成功案例,可能成为其他领域的模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72e4/9537193/b437a4ed8ed9/12021_2021_9533_Fig1_HTML.jpg

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