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重新利用胃癌药物治疗 COVID-19。

Repurposing of gastric cancer drugs against COVID-19.

机构信息

Department of Biosciences and Biomedical Engineering (BSBE), Indian Institute of Technology Indore, Khandwa Road, Simrol, Indore, 453552, India.

Department of Biochemistry, University of Allahabad, Allahabad, 211002, U.P., India.

出版信息

Comput Biol Med. 2021 Oct;137:104826. doi: 10.1016/j.compbiomed.2021.104826. Epub 2021 Sep 6.

DOI:10.1016/j.compbiomed.2021.104826
PMID:34537409
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8420180/
Abstract

Corona Virus Disease 2019 (COVID-19) caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has become a global pandemic. Additionally, the SARS-CoV-2 infection in the patients of Gastric Cancer (GC; the third leading cause of death in the world) pose a great challenge for the health management of the patients. Since there have been uncertainties to develop a new drug against COVID-19, there is an urgent need for repurposing drugs that can target key proteins of both SARS-CoV-2 and GC. The SARS-CoV-2-RdRp protein contains the NiRAN domain, which is known to have kinase-like folds. A docking study of the FDA approved drugs against GC was performed using AutoDock 4.2 and Glide Schrodinger suite 2019 against SARS-CoV-2-RdRp protein. MMGBSA and MD simulation studies were performed to investigate the binding and stability of the inhibitors with the target protein. In this study, we have found 12 kinase inhibitors with high binding energies namely Baricitinib, Brepocitinib, Decernotinib, Fasudil, Filgotinib, GSK2606414, Peficitinib, Ruxolitinib, Tofacitinib, Upadacitinib, Pamapimod and Ibrutinib. These FDA approved drugs against GC can play a key role in the treatment of COVID-19 patients along with GC as comorbidity. We also hypothesize that JAK, ITK, Rho-associated kinases, FGFR2, FYN, PERK, TYK2, p38-MAPK and SYK kinases can be considered as key therapeutic targets in COVID-19 treatment. Taken altogether, we have proposed the SARS-CoV-2-RdRp as a potential therapeutic target through in-silico studies. However, further in-vitro and in-vivo studies are required for the validation of the proposed targets and drugs for the treatment of COVID-19 patients already suffering from GC.

摘要

由严重急性呼吸系统综合征冠状病毒 2 型(SARS-CoV-2)引起的 2019 年冠状病毒病(COVID-19)已成为全球性大流行。此外,SARS-CoV-2 感染胃癌(GC;全球第三大死亡原因)患者对患者的健康管理构成了巨大挑战。由于开发针对 COVID-19 的新药存在不确定性,因此迫切需要重新利用可以针对 SARS-CoV-2 和 GC 的关键蛋白的药物。SARS-CoV-2-RdRp 蛋白包含 NiRAN 结构域,该结构域已知具有激酶样折叠。使用 AutoDock 4.2 和 Glide Schrodinger 套件 2019 对 FDA 批准的用于治疗 GC 的药物进行对接研究,以针对 SARS-CoV-2-RdRp 蛋白进行研究。进行 MMGBSA 和 MD 模拟研究,以研究抑制剂与靶蛋白的结合和稳定性。在这项研究中,我们发现了 12 种具有高结合能的激酶抑制剂,分别是巴瑞替尼、布雷波替尼、地西替尼、法舒地尔、菲戈替尼、GSK2606414、培非替尼、鲁索利替尼、托法替尼、乌帕替尼、帕玛布和依鲁替尼。这些 FDA 批准的用于治疗 GC 的药物可以在治疗 COVID-19 患者(包括 GC 合并症)方面发挥关键作用。我们还假设 JAK、ITK、Rho 相关激酶、FGFR2、FYN、PERK、TYK2、p38-MAPK 和 SYK 激酶可以被认为是 COVID-19 治疗的关键治疗靶标。总而言之,我们通过计算机模拟研究提出了 SARS-CoV-2-RdRp 作为潜在的治疗靶标。然而,需要进一步的体外和体内研究来验证针对 COVID-19 患者(已经患有 GC)的治疗的拟议靶标和药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/8e14d22d36d2/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/6110427e04a7/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/ba4f8756c810/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/e7127a71a0e5/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/857f8396e7a3/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/2076325ac220/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/8e14d22d36d2/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/6110427e04a7/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/ba4f8756c810/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/e7127a71a0e5/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/857f8396e7a3/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/2076325ac220/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/69e7/8420180/8e14d22d36d2/gr6_lrg.jpg

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