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类病毒加工:一种涉及中央保守区域和发夹I的模型。

Viroid processing: a model involving the central conserved region and hairpin I.

作者信息

Diener T O

出版信息

Proc Natl Acad Sci U S A. 1986 Jan;83(1):58-62. doi: 10.1073/pnas.83.1.58.

DOI:10.1073/pnas.83.1.58
PMID:3455758
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC322790/
Abstract

A model is proposed for the processing of oligomeric viroid replication intermediates into monomeric, circular progeny viroids. The model identifies a thermodynamically extremely stable base-paired configuration that partially or completely dimeric, as well as higher, viroid oligomers can assume and postulates that this structure, which involves structural features common to all viroids (the central conserved region and secondary hairpin I), is essential for precise cleavage and ligation. The model explains why recombinant plasmids containing tandem repeats of two or more viroid sequence equivalents are highly infectious when inoculated into viroid-susceptible plants, why certain plasmids containing partially duplicated viroid-specific inserts are less infectious, and why plasmids containing monomeric inserts are noninfectious or at best marginally infectious. The model also accounts for the fact that vector-derived sequences on either or both sides of the viroid sequence(s) of a restriction fragment are precisely excised and are lacking in progeny viroids.

摘要

提出了一个将寡聚类病毒复制中间体加工成单体环状子代类病毒的模型。该模型确定了一种热力学上极其稳定的碱基配对构型,部分或完全二聚体以及更高的类病毒寡聚体可以呈现这种构型,并假设这种涉及所有类病毒共同结构特征(中央保守区和二级发夹I)的结构对于精确切割和连接至关重要。该模型解释了为什么含有两个或更多类病毒序列等同物串联重复的重组质粒接种到易受类病毒感染的植物中时具有高度传染性,为什么某些含有部分重复类病毒特异性插入片段的质粒传染性较低,以及为什么含有单体插入片段的质粒无传染性或至多具有微弱的传染性。该模型还解释了以下事实:限制片段的类病毒序列一侧或两侧的载体衍生序列被精确切除,并且在子代类病毒中不存在。

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本文引用的文献

1
RNA intermediates in potato spindle tuber viroid replication.马铃薯纺锤块茎类病毒复制中的 RNA 中间体。
Proc Natl Acad Sci U S A. 1982 Jan;79(1):113-7. doi: 10.1073/pnas.79.1.113.
2
Longer-than-unit-length viroid minus strands are present in RNA from infected plants.在感染植物的 RNA 中存在比单位长度更长的类病毒负链。
Proc Natl Acad Sci U S A. 1981 Oct;78(10):6381-5. doi: 10.1073/pnas.78.10.6381.
3
Are viroids escaped introns?类病毒是逃离的内含子吗?
Proc Natl Acad Sci U S A. 1981 Aug;78(8):5014-5. doi: 10.1073/pnas.78.8.5014.
4
Infectivity studies on different potato spindle tuber viroid (PSTV) RNAs synthesized in vitro with the SP6 transcription system.利用SP6转录系统体外合成不同马铃薯纺锤块茎类病毒(PSTV)RNA的感染性研究。
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5
Citrus exocortis viroid: nucleotide sequence and secondary structure of an Australian isolate.柑橘裂皮类病毒:澳大利亚分离株的核苷酸序列和二级结构
FEBS Lett. 1982 Jan 25;137(2):288-92. doi: 10.1016/0014-5793(82)80369-4.
6
Detection of complementary RNA intermediates of viroid replication by Northern blot hybridization.通过Northern印迹杂交检测类病毒复制的互补RNA中间体。
Biosci Rep. 1981 Apr;1(4):327-36. doi: 10.1007/BF01114872.
7
Chrysanthemum stunt viroid: primary sequence and secondary structure.菊花矮化类病毒:一级序列和二级结构
Nucleic Acids Res. 1981 Jun 25;9(12):2741-52. doi: 10.1093/nar/9.12.2741.
8
Formation of a 2'-phosphomonoester, 3',5'-phosphodiester linkage by a novel RNA ligase in wheat germ.小麦胚芽中一种新型RNA连接酶形成2'-磷酸单酯、3',5'-磷酸二酯键。
Nature. 1981;293(5828):112-6. doi: 10.1038/293112a0.
9
Nucleotide sequence and secondary structure of citrus exocortis and chrysanthemum stunt viroid.柑橘裂皮病和菊花矮化类病毒的核苷酸序列及二级结构
Eur J Biochem. 1982 Jan;121(2):249-57. doi: 10.1111/j.1432-1033.1982.tb05779.x.
10
Circularization of linear viroid RNA via 2'-phosphomonoester, 3', 5'-phosphodiester bonds by a novel type of RNA ligase from wheat germ and Chlamydomonas.通过来自小麦胚芽和衣藻的一种新型RNA连接酶,经由2'-磷酸单酯、3',5'-磷酸二酯键实现线性类病毒RNA的环化。
Nucleic Acids Res. 1982 Dec 11;10(23):7521-9. doi: 10.1093/nar/10.23.7521.