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利用合成基因片段克隆人红细胞α-血影蛋白部分染色体基因

Cloning of a portion of the chromosomal gene for human erythrocyte alpha-spectrin by using a synthetic gene fragment.

作者信息

Linnenbach A J, Speicher D W, Marchesi V T, Forget B G

出版信息

Proc Natl Acad Sci U S A. 1986 Apr;83(8):2397-401. doi: 10.1073/pnas.83.8.2397.

DOI:10.1073/pnas.83.8.2397
PMID:3458204
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC323304/
Abstract

A region of minimal codon degeneracy was selected from the amino acid sequence of the amino-terminal alpha I domain of human erythrocyte spectrin to design a 90-base-pair DNA probe for the screening of a human genomic library. Five complementary oligonucleotides were assembled to form a full-length double-stranded DNA, which was then cloned in an M13 phage vector to generate hybridization probes. Under stringent conditions, a single hybridizing clone was isolated from a total human genomic library. Partial DNA sequence analysis established the 16.8-kilobase-pair isolate as erythrocyte alpha-spectrin by correlation to a known sequence of 131 amino acids. The spectrin 106 amino acid repeat segment is encoded by multiple exons separated by introns of various sizes. Of the 3074 base pairs of DNA sequenced thus far, 12.8% code for amino acids.

摘要

从人红细胞血影蛋白氨基末端αI结构域的氨基酸序列中选择密码子简并性最小的区域,设计一个90个碱基对的DNA探针,用于筛选人基因组文库。将五个互补寡核苷酸组装成全长双链DNA,然后克隆到M13噬菌体载体中以产生杂交探针。在严格条件下,从整个人基因组文库中分离出一个单一的杂交克隆。通过与已知的131个氨基酸序列进行比对,部分DNA序列分析确定这个16.8千碱基对的分离片段为红细胞α-血影蛋白。血影蛋白106个氨基酸重复片段由多个被不同大小内含子分隔的外显子编码。在目前已测序的3074个碱基对的DNA中,12.8%编码氨基酸。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/3937fc5f2ed6/pnas00312-0127-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/1f99084340c6/pnas00312-0124-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/05abbd727b11/pnas00312-0124-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/d332f40f0d30/pnas00312-0125-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/6b0c4a374514/pnas00312-0125-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/3937fc5f2ed6/pnas00312-0127-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/1f99084340c6/pnas00312-0124-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/05abbd727b11/pnas00312-0124-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/d332f40f0d30/pnas00312-0125-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/6b0c4a374514/pnas00312-0125-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/40bd/323304/3937fc5f2ed6/pnas00312-0127-a.jpg

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Cloning of a portion of the chromosomal gene for human erythrocyte alpha-spectrin by using a synthetic gene fragment.利用合成基因片段克隆人红细胞α-血影蛋白部分染色体基因
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本文引用的文献

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Codon catalog usage is a genome strategy modulated for gene expressivity.密码子编目使用是一种为基因表达性而调节的基因组策略。
Nucleic Acids Res. 1981 Jan 10;9(1):r43-74. doi: 10.1093/nar/9.1.213-b.
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Isolation and characterization of cDNA clones for human erythrocyte beta-spectrin.人红细胞β-血影蛋白cDNA克隆的分离与鉴定
Proc Natl Acad Sci U S A. 1987 Nov;84(21):7468-72. doi: 10.1073/pnas.84.21.7468.
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Selective expression of an erythroid-specific isoform of protein 4.1.红细胞特异性4.1蛋白异构体的选择性表达
Proc Natl Acad Sci U S A. 1988 Jun;85(11):3713-7. doi: 10.1073/pnas.85.11.3713.
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BIGPROBE: a computer program that predicts the sequence of long oligonucleotide probes with high reliability.BIGPROBE:一种能够高度可靠地预测长寡核苷酸探针序列的计算机程序。
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Sequence investigation of the major gastrointestinal tumor-associated antigen gene family, GA733.主要胃肠道肿瘤相关抗原基因家族GA733的序列研究
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The Duffy blood group is linked to the alpha-spectrin locus in a large pedigree with autosomal dominant inheritance of Charcot-Marie-Tooth disease type 1.在一个患有1型夏科-马里-图斯病常染色体显性遗传的大家族中,达菲血型与α-血影蛋白基因座相关。
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Brain spectrin, a membrane-associated protein related in structure and function to erythrocyte spectrin.脑血影蛋白,一种在结构和功能上与红细胞血影蛋白相关的膜相关蛋白。
Nature. 1982 Sep 9;299(5879):126-31. doi: 10.1038/299126a0.
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Deficient red-cell spectrin in severe, recessively inherited spherocytosis.严重隐性遗传性球形红细胞增多症中红细胞血影蛋白缺乏
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Identification of proteolytically resistant domains of human erythrocyte spectrin.人红细胞血影蛋白抗蛋白水解结构域的鉴定
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Expression of spectrin in nonerythroid cells.血影蛋白在非红细胞中的表达。
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Molecular and functional changes in spectrin from patients with hereditary pyropoikilocytosis.遗传性热异形红细胞增多症患者血影蛋白的分子与功能变化
J Clin Invest. 1983 Jun;71(6):1867-77. doi: 10.1172/jci110942.
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Structure of human erythrocyte spectrin. II. The sequence of the alpha-I domain.人类红细胞血影蛋白的结构。II. α-I结构域的序列。
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Molecular heterogeneity of hereditary pyropoikilocytosis: identification of a second variant of the spectrin alpha-subunit.遗传性热异形红细胞增多症的分子异质性:血影蛋白α亚基第二种变体的鉴定
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