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滕茶地下生厌氧杆菌亚种乙酰木聚糖酯酶的晶体结构。

Crystal structure of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis.

机构信息

Division of Life Science, Graduate School of Science and Engineering, Setsunan University, 17-8 Ikeda-Nakamachi, Neyagawa, Osaka 572-8508, Japan.

Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology, 1-8-31 Midorigaoka, Ikeda, Osaka 563-8577, Japan.

出版信息

Acta Crystallogr F Struct Biol Commun. 2021 Nov 1;77(Pt 11):399-406. doi: 10.1107/S2053230X21009675. Epub 2021 Oct 19.

Abstract

The acetylxylan esterases (AXEs) classified into carbohydrate esterase family 4 (CE4) are metalloenzymes that catalyze the deacetylation of acetylated carbohydrates. AXE from Caldanaerobacter subterraneus subsp. tengcongensis (TTE0866), which belongs to CE4, is composed of three parts: a signal sequence (residues 1-22), an N-terminal region (NTR; residues 23-135) and a catalytic domain (residues 136-324). TTE0866 catalyzes the deacetylation of highly substituted cellulose acetate and is expected to be useful for industrial applications in the reuse of resources. In this study, the crystal structure of TTE0866 (residues 23-324) was successfully determined. The crystal diffracted to 1.9 Å resolution and belonged to space group I222. The catalytic domain (residues 136-321) exhibited a (β/α)-barrel topology. However, electron density was not observed for the NTR (residues 23-135). The crystal packing revealed the presence of an intermolecular space without observable electron density, indicating that the NTR occupies this space without a defined conformation or was truncated during the crystallization process. Although the active-site conformation of TTE0866 was found to be highly similar to those of other CE4 enzymes, the orientation of its Trp264 side chain near the active site was clearly distinct. The unique orientation of the Trp264 side chain formed a different-shaped cavity within TTE0866, which may contribute to its reactivity towards highly substituted cellulose acetate.

摘要

乙酰木聚糖酯酶(AXE)属于碳水化合物酯酶家族 4(CE4),是一类金属酶,能够催化乙酰化碳水化合物的去乙酰化。来自深地栖热袍菌亚种 Tengcongensis(TTE0866)的 AXE 属于 CE4,由三部分组成:信号序列(残基 1-22)、N 端区(NTR;残基 23-135)和催化结构域(残基 136-324)。TTE0866 能够催化高度取代的醋酸纤维素的去乙酰化,有望在资源再利用的工业应用中发挥作用。在本研究中,成功地确定了 TTE0866(残基 23-324)的晶体结构。该晶体的分辨率为 1.9 Å,属于空间群 I222。催化结构域(残基 136-321)呈现出(β/α)-桶状拓扑结构。然而,NTR(残基 23-135)没有观察到电子密度。晶体堆积显示存在没有可观察电子密度的分子间空间,这表明 NTR 占据了这个空间,没有明确的构象,或者在结晶过程中被截断。尽管 TTE0866 的活性位点构象与其他 CE4 酶高度相似,但靠近活性位点的 Trp264 侧链的取向明显不同。Trp264 侧链的独特取向在 TTE0866 内形成了不同形状的腔,这可能有助于其对高度取代的醋酸纤维素的反应性。

相似文献

1
Crystal structure of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis.滕茶地下生厌氧杆菌亚种乙酰木聚糖酯酶的晶体结构。
Acta Crystallogr F Struct Biol Commun. 2021 Nov 1;77(Pt 11):399-406. doi: 10.1107/S2053230X21009675. Epub 2021 Oct 19.

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