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EPIsembleVis:对多个 COVID-19 模型预测结果的地理可视化分析与比较。

EPIsembleVis: A geo-visual analysis and comparison of the prediction ensembles of multiple COVID-19 models.

机构信息

Oak Ridge National Laboratory, PO Box 2008, MS 6085, Oak Ridge, TN 37831, United States.

出版信息

J Biomed Inform. 2021 Dec;124:103941. doi: 10.1016/j.jbi.2021.103941. Epub 2021 Nov 1.

DOI:10.1016/j.jbi.2021.103941
PMID:34737093
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8559418/
Abstract

We present EPIsembleVis, a web-based comparative visual analysis tool for evaluating the consistency of multiple COVID-19 prediction models. Our approach analyzes a collection of COVID-19 predictions from different epidemiological models as an ensemble and utilizes two metrics to quantify model performance. These metrics include (a) prediction uncertainty (represented as the dispersion of predictions in each ensemble) and (b) prediction error (calculated by comparing individual model predictions with the recorded data). Through an interactive visual interface, our approach provides a data-driven workflow for (a) selecting and constructing the COVID-19 model prediction ensemble based on the spatiotemporal overlap of available predictions of multiple epidemiological models, (b) quantifying the model performance using both the uncertainty of each model prediction ensemble, and the error of each ensemble member that represents individual model predictions, and (c) visualizing the spatiotemporal variability in the projection performance of individual models using a suite of novel ensemble visualization techniques, such as the data availability map, a spatiotemporal textured-tile calendar, multivariate rose chart, and time-series leaflet glyph. We demonstrate the capability of our ensemble visual interface through a case study that investigates the performance of weekly COVID-19 predictions, which are provided through the COVID-19 Forecast Hub UMass-Amherst Influenza Forecasting Center of Excellence [47] for the United States and United States Territories. The EPIsembleVis tool is implemented using open-source web technologies and adaptive system design, rendering it interoperable with Elasticsearch and Kibana for automatically ingesting COVID-19 predictions from online repositories, and it is generalizable for analyzing worldwide projections from more epidemiological models.

摘要

我们提出了 EPIsembleVis,这是一个基于网络的 COVID-19 预测模型比较可视化分析工具,用于评估多个 COVID-19 预测模型的一致性。我们的方法将来自不同流行病学模型的 COVID-19 预测集合作为一个整体进行分析,并使用两个指标来量化模型性能。这些指标包括(a)预测不确定性(表示为每个集合中预测的分散程度)和(b)预测误差(通过将个别模型预测与记录的数据进行比较来计算)。通过交互式可视化界面,我们的方法提供了一个数据驱动的工作流程,用于(a)根据多个流行病学模型可用预测的时空重叠,选择和构建 COVID-19 模型预测集合,(b)使用每个模型预测集合的不确定性和每个代表个别模型预测的集合成员的误差来量化模型性能,以及(c)使用一系列新颖的集合可视化技术,如数据可用性图、时空纹理平铺日历、多元玫瑰图和时间序列传单图符,可视化个别模型投影性能的时空可变性。我们通过一个案例研究展示了我们的集合可视化界面的能力,该研究调查了每周 COVID-19 预测的性能,这些预测是由 COVID-19 预测中心马萨诸塞大学阿默斯特分校流感卓越中心[47]为美国和美国领土提供的。EPIsembleVis 工具使用开源网络技术和自适应系统设计实现,使其与 Elasticsearch 和 Kibana 可互操作,用于自动从在线存储库中摄取 COVID-19 预测,并且可推广用于分析来自更多流行病学模型的全球预测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/6a57fa5d3ff5/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/334535f65c09/ga1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/4ebfa10d7b8d/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/f4c3dd8b7fce/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/57dca19a2355/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/437b6acefe9d/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/6a57fa5d3ff5/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/334535f65c09/ga1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/4ebfa10d7b8d/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/f4c3dd8b7fce/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/57dca19a2355/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/437b6acefe9d/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b0d/8559418/6a57fa5d3ff5/gr5_lrg.jpg

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