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利用转录调控因子和多组学方法激活和鉴定 sp. CA-256286 中的灰霉素簇。

Activation and Identification of a Griseusin Cluster in sp. CA-256286 by Employing Transcriptional Regulators and Multi-Omics Methods.

机构信息

The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, Building 220, 2800 Kongens Lyngby, Denmark.

Fundación MEDINA, Centro de Excelencia en Investigación de Medicamentos Innovadores en Andalucía, Parque Tecnológico de Ciencias de la Salud, Av. Conocimiento, 34, 18016 Granada, Spain.

出版信息

Molecules. 2021 Oct 30;26(21):6580. doi: 10.3390/molecules26216580.

Abstract

are well-known producers of a range of different secondary metabolites, including antibiotics and other bioactive compounds. Recently, it has been demonstrated that "silent" biosynthetic gene clusters (BGCs) can be activated by heterologously expressing transcriptional regulators from other BGCs. Here, we have activated a silent BGC in sp. CA-256286 by overexpression of a set of SARP family transcriptional regulators. The structure of the produced compound was elucidated by NMR and found to be an -acetyl cysteine adduct of the pyranonaphtoquinone polyketide 3'--α-d-forosaminyl-(+)-griseusin A. Employing a combination of multi-omics and metabolic engineering techniques, we identified the responsible BGC. These methods include genome mining, proteomics and transcriptomics analyses, in combination with CRISPR induced gene inactivations and expression of the BGC in a heterologous host strain. This work demonstrates an easy-to-implement workflow of how silent BGCs can be activated, followed by the identification and characterization of the produced compound, the responsible BGC, and hints of its biosynthetic pathway.

摘要

是多种不同次生代谢物的知名生产者,包括抗生素和其他生物活性化合物。最近,人们已经证明,“沉默”的生物合成基因簇(BGCs)可以通过异源表达来自其他 BGC 的转录调节因子来激活。在这里,我们通过过表达一组 SARP 家族转录调节因子,激活了 sp. CA-256286 中的一个沉默 BGC。通过 NMR 阐明了产生的化合物的结构,发现它是吡喃萘醌聚酮 3'--α-d-岩藻糖基-(+)-灰色菌素 A 的 -乙酰半胱氨酸加合物。我们采用多组学和代谢工程技术的组合,鉴定了负责 BGC。这些方法包括基因组挖掘、蛋白质组学和转录组学分析,结合 CRISPR 诱导的基因失活和 BGC 在异源宿主菌株中的表达。这项工作展示了一种易于实施的工作流程,用于激活沉默 BGC,然后鉴定和表征产生的化合物、负责 BGC,并暗示其生物合成途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0454/8588249/4171579e5a0b/molecules-26-06580-g001.jpg

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