Maleckar Mary M, Myklebust Lena, Uv Julie, Florvaag Per Magne, Strøm Vilde, Glinge Charlotte, Jabbari Reza, Vejlstrup Niels, Engstrøm Thomas, Ahtarovski Kiril, Jespersen Thomas, Tfelt-Hansen Jacob, Naumova Valeriya, Arevalo Hermenegild
Computational Physiology, Simula Research Laboratory, Oslo, Norway.
Department of Cardiology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.
Front Physiol. 2021 Nov 8;12:745349. doi: 10.3389/fphys.2021.745349. eCollection 2021.
Remodeling due to myocardial infarction (MI) significantly increases patient arrhythmic risk. Simulations using patient-specific models have shown promise in predicting personalized risk for arrhythmia. However, these are computationally- and time- intensive, hindering translation to clinical practice. Classical machine learning (ML) algorithms (such as K-nearest neighbors, Gaussian support vector machines, and decision trees) as well as neural network techniques, shown to increase prediction accuracy, can be used to predict occurrence of arrhythmia as predicted by simulations based solely on infarct and ventricular geometry. We present an initial combined image-based patient-specific and machine learning methodology to assess risk for dangerous arrhythmia in post-infarct patients. Furthermore, we aim to demonstrate that simulation-supported data augmentation improves prediction models, combining patient data, computational simulation, and advanced statistical modeling, improving overall accuracy for arrhythmia risk assessment. MRI-based computational models were constructed from 30 patients 5 days post-MI (the "baseline" population). In order to assess the utility biophysical model-supported data augmentation for improving arrhythmia prediction, we augmented the virtual baseline patient population. Each patient ventricular and ischemic geometry in the baseline population was used to create a subfamily of geometric models, resulting in an expanded set of patient models (the "augmented" population). Arrhythmia induction was attempted via programmed stimulation at 17 sites for each virtual patient corresponding to AHA LV segments and simulation outcome, "arrhythmia," or "no-arrhythmia," were used as ground truth for subsequent statistical prediction (machine learning, ML) models. For each patient geometric model, we measured and used choice data features: the myocardial volume and ischemic volume, as well as the segment-specific myocardial volume and ischemia percentage, as input to ML algorithms. For classical ML techniques (ML), we trained k-nearest neighbors, support vector machine, logistic regression, xgboost, and decision tree models to predict the simulation outcome from these geometric features alone. To explore neural network ML techniques, we trained both a three - and a four-hidden layer multilayer perceptron feed forward neural networks (NN), again predicting simulation outcomes from these geometric features alone. ML and NN models were trained on 70% of randomly selected segments and the remaining 30% was used for validation for both baseline and augmented populations. Stimulation in the baseline population (30 patient models) resulted in reentry in 21.8% of sites tested; in the augmented population (129 total patient models) reentry occurred in 13.0% of sites tested. ML and NN models ranged in mean accuracy from 0.83 to 0.86 for the baseline population, improving to 0.88 to 0.89 in all cases. Machine learning techniques, combined with patient-specific, image-based computational simulations, can provide key clinical insights with high accuracy rapidly and efficiently. In the case of sparse or missing patient data, simulation-supported data augmentation can be employed to further improve predictive results for patient benefit. This work paves the way for using data-driven simulations for prediction of dangerous arrhythmia in MI patients.
心肌梗死(MI)导致的心脏重塑会显著增加患者发生心律失常的风险。使用患者特异性模型进行的模拟在预测心律失常的个性化风险方面显示出了前景。然而,这些模拟计算量和时间成本都很高,阻碍了其向临床实践的转化。经典机器学习(ML)算法(如K近邻算法、高斯支持向量机和决策树)以及神经网络技术已被证明可以提高预测准确性,可用于预测仅基于梗死和心室几何形状的模拟所预测的心律失常的发生情况。我们提出了一种基于图像的初步患者特异性和机器学习相结合的方法,以评估心肌梗死后患者发生危险心律失常的风险。此外,我们旨在证明模拟支持的数据增强可改善预测模型,将患者数据、计算模拟和先进的统计建模相结合,提高心律失常风险评估的整体准确性。基于MRI构建了30例心肌梗死后5天患者的计算模型(“基线”人群)。为了评估生物物理模型支持的数据增强对改善心律失常预测的效用,我们对虚拟基线患者人群进行了增强。基线人群中每个患者的心室和缺血几何形状被用于创建几何模型的子族,从而得到一组扩展的患者模型(“增强”人群)。通过对每个虚拟患者对应于美国心脏协会(AHA)左心室节段的17个部位进行程控刺激来尝试诱发心律失常,模拟结果“心律失常”或“无心律失常”被用作后续统计预测(机器学习,ML)模型的真实数据。对于每个患者几何模型,我们测量并使用了以下数据特征作为ML算法的输入:心肌体积和缺血体积,以及节段特异性心肌体积和缺血百分比。对于经典ML技术(ML),我们训练了K近邻、支持向量机、逻辑回归、XGBoost和决策树模型,仅根据这些几何特征来预测模拟结果。为了探索神经网络ML技术,我们训练了一个三层和一个四层隐藏层的多层感知器前馈神经网络(NN),同样仅根据这些几何特征来预测模拟结果。ML和NN模型在随机选择的70%的节段上进行训练,其余30%用于基线和增强人群的验证。在基线人群(30个患者模型)中进行刺激,导致在所测试部位的21.8%出现折返;在增强人群(总共129个患者模型)中,在所测试部位的13.0%出现折返。对于基线人群,ML和NN模型的平均准确率在0.83至0.86之间,在所有情况下均提高到0.88至0.89。机器学习技术与患者特异性的、基于图像的计算模拟相结合,可以快速有效地提供高精度的关键临床见解。在患者数据稀疏或缺失的情况下,可以采用模拟支持的数据增强来进一步改善预测结果,以造福患者。这项工作为使用数据驱动的模拟来预测心肌梗死患者的危险心律失常铺平了道路。