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用于癌症分类的基因表达微阵列数据特征选择方法:一项系统综述。

Feature selection methods on gene expression microarray data for cancer classification: A systematic review.

作者信息

Alhenawi Esra'a, Al-Sayyed Rizik, Hudaib Amjad, Mirjalili Seyedali

机构信息

King Abdullah II School for Information Technology, The University of Jordan, Amman, Jordan.

Center for Artificial Intelligence Research and Optimization, Torrens University Australia, Fortitude Valley, Brisbane, 4006, QLD, Australia; Yonsei Frontier Lab, Yonsei University, Seoul, South Korea.

出版信息

Comput Biol Med. 2022 Jan;140:105051. doi: 10.1016/j.compbiomed.2021.105051. Epub 2021 Nov 23.

Abstract

This systematic review provides researchers interested in feature selection (FS) for processing microarray data with comprehensive information about the main research directions for gene expression classification conducted during the recent seven years. A set of 132 researches published by three different publishers is reviewed. The studied papers are categorized into nine directions based on their objectives. The FS directions that received various levels of attention were then summarized. The review revealed that 'propose hybrid FS methods' represented the most interesting research direction with a percentage of 34.9%, while the other directions have lower percentages that ranged from 13.6% down to 3%. This guides researchers to select the most competitive research direction. Papers in each category are thoroughly reviewed based on six perspectives, mainly: method(s), classifier(s), dataset(s), dataset dimension(s) range, performance metric(s), and result(s) achieved.

摘要

本系统综述为那些对处理微阵列数据的特征选择(FS)感兴趣的研究人员提供了关于近七年来基因表达分类主要研究方向的全面信息。我们对由三个不同出版商发表的132项研究进行了综述。根据研究目标,所研究的论文被分为九个方向。然后总结了受到不同程度关注的FS方向。综述显示,“提出混合FS方法”代表了最受关注的研究方向,占比34.9%,而其他方向的占比则较低,从13.6%到3%不等。这为研究人员选择最具竞争力的研究方向提供了指导。基于六个视角对每个类别的论文进行了全面综述,主要包括:方法、分类器、数据集、数据集维度范围、性能指标以及取得的结果。

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