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HODD:一个经过人工整理的人类眼科疾病数据库,包含症状特征和遗传变异信息,旨在帮助快速明确诊断。

HODD: A Manually Curated Database of Human Ophthalmic Diseases with Symptom Characteristics and Genetic Variants Towards Facilitating Quick and Definite Diagnosis.

机构信息

State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, 510060, China.

Innovative Institute of Chinese Medicine and Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, 611137, China.

出版信息

Interdiscip Sci. 2022 Jun;14(2):385-393. doi: 10.1007/s12539-021-00494-9. Epub 2021 Nov 30.

Abstract

Ophthalmic diseases are disorders that affect the eyes. Hundreds of causal genes and biological pathways have been reported to be closely correlated with ophthalmic diseases. However, these information are scattered across various resources, which has hindered a thorough and deep understanding of ophthalmic diseases. In the present work, we proposed the Human Ophthalmic Diseases Database (HODD), which currently deposits 730 ophthalmic diseases and 653 related genes and is available at http://bio-bigdata.cn/HODD/ . The disease-related information and genes related to ophthalmic diseases were collected from the several well-known databases. To comprehensively understand the ophthalmic diseases, the basic information was provided for each disease, including disease description, related genes, gene location, ocular and extraocular effect of the disease, protein-protein interaction and disease-associated pathways. All these data were reorganized and made accessible through multiple entrances. We hope that HODD will facilitate studies on ophthalmic diseases. The workflow for the construction of the HODD (Human Ophthalmic Diseases Database, http://bio-bigdata.cn/HODD/ ) database.

摘要

眼科疾病是影响眼睛的疾病。已有数百个致病基因和生物途径被报道与眼科疾病密切相关。然而,这些信息分散在各种资源中,这阻碍了对眼科疾病的全面和深入了解。在本工作中,我们提出了人类眼科疾病数据库(HODD),目前该数据库收录了 730 种眼科疾病和 653 个相关基因,可在 http://bio-bigdata.cn/HODD/ 上获取。疾病相关信息和与眼科疾病相关的基因是从几个著名的数据库中收集的。为了全面了解眼科疾病,我们为每种疾病提供了基本信息,包括疾病描述、相关基因、基因位置、疾病对眼和眼外的影响、蛋白质-蛋白质相互作用和疾病相关途径。所有这些数据都通过多个入口进行了重新组织和提供。我们希望 HODD 将有助于眼科疾病的研究。HODD(人类眼科疾病数据库,http://bio-bigdata.cn/HODD/)数据库的构建工作流程。

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