Gour Mahesh, Jain Sweta
Maulana Azad National Institute of Technology, Bhopal, MP, 462003, India.
Maulana Azad National Institute of Technology, Bhopal, MP, 462003, India.
Comput Biol Med. 2022 Jan;140:105047. doi: 10.1016/j.compbiomed.2021.105047. Epub 2021 Nov 23.
Deep learning (DL) has shown great success in the field of medical image analysis. In the wake of the current pandemic situation of SARS-CoV-2, a few pioneering works based on DL have made significant progress in automated screening of COVID-19 disease from the chest X-ray (CXR) images. But these DL models have no inherent way of expressing uncertainty associated with the model's prediction, which is very important in medical image analysis. Therefore, in this paper, we develop an uncertainty-aware convolutional neural network model, named UA-ConvNet, for the automated detection of COVID-19 disease from CXR images, with an estimation of associated uncertainty in the model's predictions. The proposed approach utilizes the EfficientNet-B3 model and Monte Carlo (MC) dropout, where an EfficientNet-B3 model has been fine-tuned on the CXR images. During inference, MC dropout has been applied for M forward passes to obtain the posterior predictive distribution. After that mean and entropy have been calculated on the obtained predictive distribution to get the mean prediction and model uncertainty. The proposed method is evaluated on the three different datasets of chest X-ray images, namely the COVID19CXr, X-ray image, and Kaggle datasets. The proposed UA-ConvNet model achieves a G-mean of 98.02% (with a Confidence Interval (CI) of 97.99-98.07) and sensitivity of 98.15% for the multi-class classification task on the COVID19CXr dataset. For binary classification, the proposed model achieves a G-mean of 99.16% (with a CI of 98.81-99.19) and a sensitivity of 99.30% on the X-ray Image dataset. Our proposed approach shows its superiority over the existing methods for diagnosing the COVID-19 cases from the CXR images.
深度学习(DL)在医学图像分析领域已取得巨大成功。在当前新型冠状病毒(SARS-CoV-2)大流行的情况下,一些基于深度学习的开创性工作在通过胸部X光(CXR)图像自动筛查新冠肺炎疾病方面取得了重大进展。但这些深度学习模型没有内在方式来表达与模型预测相关的不确定性,而这在医学图像分析中非常重要。因此,在本文中,我们开发了一种不确定性感知卷积神经网络模型,名为UA-ConvNet,用于从CXR图像中自动检测新冠肺炎疾病,并估计模型预测中的相关不确定性。所提出的方法利用了EfficientNet-B3模型和蒙特卡洛(MC)随机失活,其中EfficientNet-B3模型已在CXR图像上进行了微调。在推理过程中,MC随机失活已应用于M次前向传播以获得后验预测分布。之后,对获得的预测分布计算均值和熵,以得到平均预测和模型不确定性。所提出的方法在胸部X光图像的三个不同数据集上进行了评估,即COVID19CXr、X光图像和Kaggle数据集。所提出的UA-ConvNet模型在COVID19CXr数据集上的多类分类任务中实现了98.02%的G均值(置信区间(CI)为97.99 - 98.07)和98.15%的灵敏度。对于二分类,所提出的模型在X光图像数据集上实现了99.16%的G均值(CI为98.81 - 99.19)和99.30%的灵敏度。我们提出的方法在从CXR图像诊断新冠肺炎病例方面显示出优于现有方法的优势。