Zhou Jie, Hu Yaping, Li Jiajia, Yu Zhaoyan, Guo Qirong
Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China.
International Center of Bamboo and Rattan, Beijing, China.
Front Genet. 2021 Nov 30;12:710113. doi: 10.3389/fgene.2021.710113. eCollection 2021.
The gene encodes a ubiquitin ligase that contains a U-box domain. The plant U-box (PUB) protein plays an important role in the plant stress response; however, very few studies have investigated the role of these proteins in Moso bamboo (). Thus, more research on PUB proteins is necessary to understand the mechanisms of stress tolerance in . In this study, we identified 121 members of the PUB family in (), using bioinformatics based on the V2 genome build. The genes of showed an uneven distribution among the chromosomes. Phylogenetic analysis of the genes between and suggested that these genes can be classified into eight subgroups (Groups I-VIII) based on their structural and phylogenetic features. All genes and the structure of their encoded proteins were identified in . We further investigated the expression pattern of genes in different tissues, including the leaves, panicles, rhizomes, roots, and shoots. The qRT-PCR results showed that expression of three genes, , and , was upregulated at low temperatures compared to that at 25°C. The expression levels of two , and , were upregulated under drought stress. These results suggest that the genes play an important role in resistance to low temperatures and drought in . This research provides new insight into the function, diversity, and characterization of genes in and provides a basis for understanding their biological roles and molecular mechanisms.
该基因编码一种含有U-box结构域的泛素连接酶。植物U-box(PUB)蛋白在植物应激反应中起重要作用;然而,很少有研究调查这些蛋白在毛竹中的作用。因此,有必要对PUB蛋白进行更多研究以了解毛竹的抗逆机制。在本研究中,我们基于毛竹V2基因组构建,利用生物信息学方法在毛竹中鉴定出121个PUB家族成员。毛竹的基因在染色体上分布不均。毛竹与其他物种基因的系统发育分析表明,根据其结构和系统发育特征,这些基因可分为八个亚组(第一组至第八组)。我们在毛竹中鉴定出了所有基因及其编码蛋白的结构。我们进一步研究了基因在不同组织中的表达模式,包括叶片、圆锥花序、根状茎、根和笋。qRT-PCR结果表明,与25℃相比,三个基因(、和)在低温下表达上调。两个基因(和)的表达水平在干旱胁迫下上调。这些结果表明,基因在毛竹抗低温和干旱中起重要作用。本研究为毛竹基因的功能、多样性和特性提供了新的见解,并为理解其生物学作用和分子机制提供了依据。