Suppr超能文献

中的NHX基因家族:全基因组鉴定、表达谱及调控网络分析

NHX Gene Family in : Genome-Wide Identification, Expression Profiles, and Regulatory Network Analysis.

作者信息

Paul Abhirup, Chatterjee Archita, Subrahmanya Shreya, Shen Guoxin, Mishra Neelam

机构信息

Independent Researcher, Bangalore, India.

Department of Botany, St. Joseph's College Autonomous, Bangalore, India.

出版信息

Front Plant Sci. 2021 Dec 20;12:777884. doi: 10.3389/fpls.2021.777884. eCollection 2021.

Abstract

Salt stress affects the plant growth and productivity worldwide and NHX is one of those genes that are well known to improve salt tolerance in transgenic plants. It is well characterized in several plants, such as and cotton; however, not much is known about NHXs in tea plant. In the present study, NHX genes of tea were obtained through a genome-wide search using as reference genome. Out of the 9 NHX genes in tea, 7 genes were localized in vacuole while the remaining 2 genes were localized in the endoplasmic reticulum (ER; ) and plasma membrane (PM; ), respectively. Furthermore, phylogenetic relationships along with structural analysis which includes gene structure, location, and protein-conserved motifs and domains were systematically examined and further, predictions were validated by the expression analysis. The dN/dS values show that the majority of tea NHX genes is subjected to strong purifying selection under the course of evolution. Also, functional interaction was carried out in based on the orthologous genes in . The expression profiles linked to various stress treatments revealed wide involvement of NHX genes from tea in response to various abiotic factors. This study provides the targets for further comprehensive identification, functional study, and also contributed for a better understanding of the NHX regulatory network in .

摘要

盐胁迫影响着全球范围内的植物生长和生产力,而NHX是已知能提高转基因植物耐盐性的基因之一。它在几种植物中,如[未提及植物名称]和棉花中已有充分研究;然而,茶树中NHX基因的相关信息却知之甚少。在本研究中,以[未提及参考基因组名称]为参考基因组,通过全基因组搜索获得了茶树的NHX基因。茶树中的9个NHX基因中,有7个基因定位于液泡,其余2个基因分别定位于内质网(ER;[未提及内质网相关内容])和质膜(PM;[未提及质膜相关内容])。此外,系统地研究了系统发育关系以及包括基因结构、位置、蛋白质保守基序和结构域在内的结构分析,并且通过表达分析对预测结果进行了验证。dN/dS值表明,大多数茶树NHX基因在进化过程中受到强烈的纯化选择。此外,基于[未提及相关物种名称]中的直系同源基因在[未提及相关物种名称]中进行了功能相互作用研究。与各种胁迫处理相关的表达谱揭示了茶树NHX基因广泛参与对各种非生物因子的响应。本研究为进一步全面鉴定、功能研究提供了靶点,也有助于更好地理解[未提及相关物种名称]中的NHX调控网络。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/96b6/8720784/c55d62066d49/fpls-12-777884-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验