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开箱即用的黑箱——理解土壤微生物组的一步之遥:系统评价。

Unboxing the black box-one step forward to understand the soil microbiome: A systematic review.

机构信息

Academy of Scientific and Innovative Research [AcSIR], Ghaziabad, 201002, India.

Environmental Biotechnology and Genomics Division, , CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, 440020, Maharashtra, India.

出版信息

Microb Ecol. 2023 Feb;85(2):669-683. doi: 10.1007/s00248-022-01962-5. Epub 2022 Feb 2.

Abstract

Soil is one of the most important assets of the planet Earth, responsible for maintaining the biodiversity and managing the ecosystem services for both managed and natural ecosystems. It encompasses large proportion of microscopic biodiversity, including prokaryotes and the microscopic eukaryotes. Soil microbiome is critical in managing the soil functions, but their activities have diminutive recognition in few systems like desert land and forest ecosystems. Soil microbiome is highly dependent on abiotic and biotic factors like pH, carbon content, soil structure, texture, and vegetation, but it can notably vary with ecosystems and the respective inhabitants. Thus, unboxing this black box is essential to comprehend the basic components adding to the soil systems and supported ecosystem services. Recent advancements in the field of molecular microbial ecology have delivered commanding tools to examine this genetic trove of soil biodiversity. Objective of this review is to provide a critical evaluation of the work on the soil microbiome, especially since the advent of the NGS techniques. The review also focuses on advances in our understanding of soil communities, their interactions, and functional capabilities along with understanding their role in maneuvering the biogeochemical cycle while underlining and tapping the unprecedented metagenomics data to infer the ecological attributes of yet undiscovered soil microbiome. This review focuses key research directions that could shape the future of basic and applied research into the soil microbiome. This review has led us to understand that it is difficult to generalize that soil microbiome plays a substantiated role in shaping the soil networks and it is indeed a vital resource for sustaining the ecosystem functioning. Exploring soil microbiome will help in unlocking their roles in various soil network. It could be resourceful in exploring and forecasting its impacts on soil systems and for dealing with alleviating problems like rapid climate change.

摘要

土壤是地球最重要的资产之一,负责维持生物多样性并管理管理和自然生态系统的生态系统服务。它包含了大量的微观生物多样性,包括原核生物和微观真核生物。土壤微生物组对于管理土壤功能至关重要,但它们的活动在沙漠土地和森林生态系统等少数系统中认识不足。土壤微生物组高度依赖于非生物和生物因素,如 pH 值、碳含量、土壤结构、质地和植被,但它可能会随着生态系统和各自的居民而显著变化。因此,揭开这个黑盒子对于理解构成土壤系统和支持生态系统服务的基本组成部分至关重要。分子微生物生态学领域的最新进展为研究土壤生物多样性提供了强大的工具。本综述的目的是对土壤微生物组的工作进行批判性评估,特别是自 NGS 技术出现以来。本综述还重点介绍了我们对土壤群落及其相互作用和功能能力的理解的进展,同时了解它们在操纵生物地球化学循环中的作用,强调并利用前所未有的宏基因组学数据来推断尚未发现的土壤微生物组的生态属性。本综述关注可能塑造未来基础和应用研究土壤微生物组的关键研究方向。本综述使我们了解到,普遍认为土壤微生物组在塑造土壤网络方面起着实质性的作用是困难的,它确实是维持生态系统功能的重要资源。探索土壤微生物组将有助于揭示它们在各种土壤网络中的作用。它可以在探索和预测其对土壤系统的影响以及解决快速气候变化等问题方面提供帮助。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/80e1/9957845/9adc7eef1fbd/248_2022_1962_Fig1_HTML.jpg

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