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利用双纳米抗体大麻素传感器定义分子胶。

Defining molecular glues with a dual-nanobody cannabidiol sensor.

机构信息

Howard Hughes Medical Institute, Department of Pharmacology, University of Washington, Seattle, WA, 98195, USA.

Department of Biochemistry and Institute for Protein Design, University of Washington, Seattle, WA, 98195, USA.

出版信息

Nat Commun. 2022 Feb 10;13(1):815. doi: 10.1038/s41467-022-28507-1.

Abstract

"Molecular glue" (MG) is a term coined to describe the mechanism of action of the plant hormone auxin and subsequently used to characterize synthetic small molecule protein degraders exemplified by immune-modulatory imide drugs (IMiDs). Prospective development of MGs, however, has been hampered by its elusive definition and thermodynamic characteristics. Here, we report the crystal structure of a dual-nanobody cannabidiol-sensing system, in which the ligand promotes protein-protein interaction in a manner analogous to auxin. Through quantitative analyses, we draw close parallels among the dual-nanobody cannabidiol sensor, the auxin perception complex, and the IMiDs-bound CRL4 E3, which can bind and ubiquitinate "neo-substrates". All three systems, including the recruitment of IKZF1 and CK1α to CRBN, are characterized by the lack of ligand binding activity in at least one protein partner and an under-appreciated preexisting low micromolar affinity between the two proteinaceous subunits that is enhanced by the ligand to reach the nanomolar range. These two unifying features define MGs as a special class of proximity inducers distinct from bifunctional compounds and can be used as criteria to guide target selection for future rational discovery of MGs.

摘要

“分子胶”(MG)是一个术语,用于描述植物激素生长素的作用机制,随后用于描述合成小分子蛋白降解剂,例如免疫调节酰亚胺药物(IMiDs)。然而,MG 的预期发展受到其难以捉摸的定义和热力学特性的阻碍。在这里,我们报告了一个双纳米体大麻素感应系统的晶体结构,其中配体以类似于生长素的方式促进蛋白质-蛋白质相互作用。通过定量分析,我们在双纳米体大麻素传感器、生长素感应复合物和 IMiDs 结合的 CRL4 E3 之间得出了紧密的相似之处,后者可以结合并泛素化“新底物”。所有这三个系统,包括 IKZF1 和 CK1α 到 CRBN 的募集,其特征是至少一个蛋白质伴侣缺乏配体结合活性,并且两个蛋白质亚基之间存在未被充分认识的预先存在的低微摩尔亲和力,该亲和力通过配体增强到纳米摩尔范围。这两个统一的特征将 MG 定义为一类特殊的近诱导物,与双功能化合物不同,并可作为指导未来合理发现 MG 的目标选择的标准。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c1a/8831599/bff4dadce955/41467_2022_28507_Fig1_HTML.jpg

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