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鉴定和分析非梗阻性无精子症患者睾丸组织中的环状 RNA。

Identification and characterization of circular RNAs in the testicular tissue of patients with non-obstructive azoospermia.

机构信息

Department of Urology, Peking University Third Hospital, Beijing 100191, China.

Department of Andrology, Peking University Third Hospital, Beijing 100191, China.

出版信息

Asian J Androl. 2022 Nov-Dec;24(6):660-665. doi: 10.4103/aja2021131.

DOI:10.4103/aja2021131
PMID:35229760
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9809480/
Abstract

Circular RNAs (circRNAs) are highly conserved and ubiquitously expressed noncoding RNAs that participate in multiple reproduction-related diseases. However, the expression pattern and potential functions of circRNAs in the testes of patients with non-obstructive azoospermia (NOA) remain elusive. In this study, according to a circRNA array, a total of 37 881 circRNAs were identified that were differentially expressed in the testes of NOA patients compared with normal controls, including 19 874 upregulated circRNAs and 18 007 downregulated circRNAs. Using quantitative real-time polymerase chain reaction (qRT-PCR) analysis, we confirmed that the change tendency of some specific circRNAs, including hsa_circ_0137890, hsa_circ_0136298, and hsa_circ_0007273, was consistent with the microarray data in another larger sample. The structures and characteristics of these circRNAs were confirmed by Sanger sequencing, and fluorescence in situ hybridization revealed that these circRNAs were primarily expressed in the cytoplasm. Bioinformatics analysis was used to construct the competing endogenous RNA (ceRNA) network, and numerous miRNAs that could be paired with circRNAs validated in this study were reported to be vital for spermatogenesis regulation. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses indicated that genes involved in axoneme assembly, microtubule-based processes, and cell proliferation were significantly enriched. Our data suggest that there are aberrantly expressed circRNA profiles in patients with NOA and that these circRNAs may help identify key diagnostic and therapeutic molecular biomarkers for NOA patients.

摘要

环状 RNA(circRNAs)是高度保守且广泛表达的非编码 RNA,参与多种与生殖相关的疾病。然而,非梗阻性无精子症(NOA)患者睾丸中 circRNAs 的表达模式和潜在功能仍不清楚。在这项研究中,根据 circRNA 芯片,共鉴定出 37881 个在 NOA 患者睾丸中与正常对照相比差异表达的 circRNAs,包括 19874 个上调的 circRNAs 和 18007 个下调的 circRNAs。通过实时定量聚合酶链反应(qRT-PCR)分析,我们证实了一些特定 circRNAs 的变化趋势,包括 hsa_circ_0137890、hsa_circ_0136298 和 hsa_circ_0007273,与另一个更大样本的微阵列数据一致。通过 Sanger 测序证实了这些 circRNAs 的结构和特征,荧光原位杂交显示这些 circRNAs主要在细胞质中表达。通过生物信息学分析构建了竞争性内源性 RNA(ceRNA)网络,并报告了与本研究中验证的 circRNAs 配对的大量 miRNA 对精子发生调节至关重要。基因本体论和京都基因与基因组百科全书通路富集分析表明,参与轴丝组装、微管相关过程和细胞增殖的基因显著富集。我们的数据表明,NOA 患者存在异常表达的 circRNA 谱,这些 circRNAs 可能有助于鉴定 NOA 患者的关键诊断和治疗分子生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4805/9809480/327e5d1de66f/AJA-24-660-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4805/9809480/23aa141d9464/AJA-24-660-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4805/9809480/e2e55d06c577/AJA-24-660-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4805/9809480/c0b23a11b04f/AJA-24-660-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4805/9809480/327e5d1de66f/AJA-24-660-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4805/9809480/23aa141d9464/AJA-24-660-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4805/9809480/e2e55d06c577/AJA-24-660-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4805/9809480/c0b23a11b04f/AJA-24-660-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4805/9809480/327e5d1de66f/AJA-24-660-g004.jpg

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