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利用基因本体论推进心脏传导系统研究

GOing Forward With the Cardiac Conduction System Using Gene Ontology.

作者信息

Chloe Li Kan Yan, Cook Andrew C, Lovering Ruth C

机构信息

Department of Preclinical and Fundamental Science, Institute of Cardiovascular Science, Functional Gene Annotation, University College London, London, United Kingdom.

Department of Children's Cardiovascular Disease, Centre for Morphology and Structural Heart Disease, Institute of Cardiovascular Science, University College London, London, United Kingdom.

出版信息

Front Genet. 2022 Mar 2;13:802393. doi: 10.3389/fgene.2022.802393. eCollection 2022.

DOI:10.3389/fgene.2022.802393
PMID:35309148
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8924464/
Abstract

The cardiac conduction system (CCS) comprises critical components responsible for the initiation, propagation, and coordination of the action potential. Aberrant CCS development can cause conduction abnormalities, including sick sinus syndrome, accessory pathways, and atrioventricular and bundle branch blocks. Gene Ontology (GO; http://geneontology.org/) is an invaluable global bioinformatics resource which provides structured, computable knowledge describing the functions of gene products. Many gene products are known to be involved in CCS development; however, this information is not comprehensively captured by GO. To address the needs of the heart development research community, this study aimed to describe the specific roles of proteins reported in the literature to be involved with CCS development and/or function. 14 proteins were prioritized for GO annotation which led to the curation of 15 peer-reviewed primary experimental articles using carefully selected GO terms. 152 descriptive GO annotations, including those describing sinoatrial node and atrioventricular node development were created and submitted to the GO Consortium database. A functional enrichment analysis of 35 key CCS development proteins confirmed that this work has improved the interpretation of this CCS dataset. This work may improve future investigations of the CCS with application of high-throughput methods such as genome-wide association studies analysis, proteomics, and transcriptomics.

摘要

心脏传导系统(CCS)由负责动作电位的起始、传播和协调的关键组件组成。CCS发育异常可导致传导异常,包括病态窦房结综合征、附加通路以及房室和束支传导阻滞。基因本体论(GO;http://geneontology.org/)是一个非常有价值的全球生物信息学资源,它提供了描述基因产物功能的结构化、可计算的知识。已知许多基因产物参与CCS的发育;然而,这些信息并未被GO全面涵盖。为满足心脏发育研究领域的需求,本研究旨在描述文献中报道的参与CCS发育和/或功能的蛋白质的具体作用。对14种蛋白质进行了GO注释优先级排序,这导致使用精心挑选的GO术语整理了15篇经同行评审的主要实验文章。创建了152条描述性GO注释,包括那些描述窦房结和房室结发育的注释,并提交给了GO联盟数据库。对35种关键CCS发育蛋白的功能富集分析证实,这项工作改进了对该CCS数据集的解释。这项工作可能会改善未来使用全基因组关联研究分析、蛋白质组学和转录组学等高通量方法对CCS的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1100/8924464/eff4f650bf59/fgene-13-802393-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1100/8924464/eff4f650bf59/fgene-13-802393-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1100/8924464/eff4f650bf59/fgene-13-802393-g001.jpg

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