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胃癌预后与免疫治疗中家族与肿瘤微环境的泛癌串扰

The Pan-Cancer Crosstalk Between the Family and Tumor Microenvironment for Prognosis and Immunotherapy of Gastric Cancer.

作者信息

Xie Rongrong, Yuan Mengping, Jiang Yiyan

机构信息

Department of Radiotherapy, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, China.

Department of Gastroenterology, The Second Affiliated Hospital of Wenzhou Medical University, Wenzhou, China.

出版信息

Front Cell Dev Biol. 2022 Mar 2;10:790947. doi: 10.3389/fcell.2022.790947. eCollection 2022.

Abstract

have important physiological functions in regulating tumorigenesis and metastasis. However, correlating genes in the tumor immune microenvironment (TIME), and the prognosis of patients with gastric cancer remains to be determined. Using public databases, the expression of in pan-cancer and gastric cancer was comprehensively analyzed using UCSC Xena, the Oncomine dataset and UALCAN. We further completed survival analysis by Kaplan-Meier plotter to evaluate the prognosis of the high and low expression groups of the gene in patients with gastric cancer. The TIMER tool was used to reveal the correlation between immune cell infiltration and genes of interest. Spearman correlation was used to find an association between the genes and tumor stem cells, TIME, microsatellite instability (MSI) or tumor mutational burden (TMB). We also used cBioportal, GeneMANIA and STRINGS to explore the types of changes in these genes and the protein interactions. Finally, we described the TIME based on QUANTISEQ algorithm, predicted the relationship between the genes and half-maximal inhibitory concentration (IC), and analyzed the relationship between the family genes and immune checkpoints. The expression of , , , and was elevated in pan-cancer. Compared with normal adjacent tissues, , , and were up-regulated in gastric cancer. In terms of the influence on the survival of patients, the expression of and were related to overall survival (OS) and disease-free survival (DFS) for patients with gastric cancer. High expression of often predicted poor OS and DFS. In gastric cancer, the expression of and showed a significant negative correlation with B cells. The higher the expression of , the higher the abundance of B cells, CD4+T cells and macrophages. CD8+T cells, dendritic cells infiltration and expression were negatively correlated. The infiltration of CD4+T cells, macrophages and neutrophils was negatively correlated with the expression of , , and . TMB and MSI were positively correlated with / expression. In the tumor microenvironment and drug sensitivity, also showed a significant correlation. In addition, we explored the relationship between the family genes and the immune microenvironment (B cells, M2 macrophages, monocytes, CD8 T cells, regulatory T cells, myeloid dendritic cells, natural killer cells, non-regulatory CD4 T cells), immune checkpoint (, , , ), and IC of common chemotherapeutic drugs for gastric cancer (5-fluorouracil, cisplatin, docetaxel and gemcitabine). Our study provides new ideas for tumor treatment and prognosis from the perspective of TIME, and nominates - to become potential therapeutic targets for gastric cancer.

摘要

在调节肿瘤发生和转移方面具有重要的生理功能。然而,肿瘤免疫微环境(TIME)中的相关基因与胃癌患者的预后仍有待确定。利用公共数据库,通过UCSC Xena、Oncomine数据集和UALCAN全面分析了该基因在泛癌和胃癌中的表达情况。我们进一步通过Kaplan-Meier绘图仪完成生存分析,以评估该基因高表达和低表达组在胃癌患者中的预后。使用TIMER工具揭示免疫细胞浸润与感兴趣基因之间的相关性。采用Spearman相关性分析来寻找该基因与肿瘤干细胞、TIME、微卫星不稳定性(MSI)或肿瘤突变负荷(TMB)之间的关联。我们还使用cBioportal、GeneMANIA和STRING来探索这些基因的变化类型和蛋白质相互作用。最后,我们基于QUANTISEQ算法描述了TIME,预测了该基因与半数抑制浓度(IC)之间的关系,并分析了该家族基因与免疫检查点之间的关系。该基因、该基因、该基因和该基因在泛癌中的表达升高。与癌旁正常组织相比,该基因、该基因和该基因在胃癌中上调。就对患者生存的影响而言,该基因和该基因的表达与胃癌患者的总生存期(OS)和无病生存期(DFS)相关。该基因高表达通常预示着较差的OS和DFS。在胃癌中,该基因和该基因的表达与B细胞呈显著负相关。该基因表达越高,B细胞、CD4+T细胞和巨噬细胞的丰度越高。CD8+T细胞、树突状细胞浸润与该基因表达呈负相关。CD4+T细胞、巨噬细胞和中性粒细胞的浸润与该基因、该基因和该基因的表达呈负相关。TMB和MSI与该基因/该基因表达呈正相关。在肿瘤微环境和药物敏感性方面,该基因也显示出显著相关性。此外,我们还探索了该家族基因与免疫微环境(B细胞、M2巨噬细胞、单核细胞、CD8 T细胞、调节性T细胞、髓样树突状细胞、自然杀伤细胞、非调节性CD4 T细胞)、免疫检查点(该基因、该基因、该基因、该基因)以及胃癌常用化疗药物(5-氟尿嘧啶、顺铂、多西他赛和吉西他滨)的IC之间的关系。我们的研究从TIME的角度为肿瘤治疗和预后提供了新思路,并提名该基因成为胃癌潜在的治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7d82/8924469/bcfc11548e22/fcell-10-790947-g001.jpg

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