Wang Libo, Liu Zaoqu, Zhu Rongtao, Liang Ruopeng, Wang Weijie, Li Jian, Zhang Yuyuan, Guo Chunguang, Han Xinwei, Sun Yuling
Department of Hepatobiliary and Pancreatic Surgery, The First Affiliated Hospital of Zhengzhou University, Zhengzhou 450052, Henan Province, China.
Institute of Hepatobiliary and Pancreatic Diseases, Zhengzhou University, Zhengzhou 450052, Henan Province, China.
Comput Struct Biotechnol J. 2022 Mar 2;20:1154-1167. doi: 10.1016/j.csbj.2022.02.031. eCollection 2022.
mutation was recently implicated in promoting invasion and poor prognosis of pancreatic cancer (PACA) by regulating the tumor immune microenvironment. However, -driven immune landscape and clinical significance remain elusive. In this study, we applied the consensus clustering and weighted correlation network analysis (WGCNA) to identify two heterogeneous immune subtypes and immune genes. Combined with -driven genes determined by mutation status, a -driven immune signature (SDIS) was developed in ICGC-AU2 (microarray data) via machine learning algorithm, and then was validated by RNA-seq data (TCGA, ICGC-AU and ICGC-CA) and microarray data (GSE62452 and GSE85916). The high-risk group displayed a worse prognosis, and multivariate Cox regression indicated that SDIS was an independent prognostic factor. In six cohorts, SDIS also displayed excellent accuracy in predicting prognosis. Moreover, the high-risk group was characterized by higher frequencies of / mutations and deletion, superior immune checkpoint molecules expression and more sensitive to chemotherapy and immunotherapy. Meanwhile, the low-risk group was significantly enriched in metabolism-related pathways and suggested the potential to target tumor metabolism to develop specific drugs. Overall, SDIS could robustly predict prognosis in PACA, which might serve as an attractive platform to further tailor decision-making in chemotherapy and immunotherapy in clinical settings.
最近的研究表明,突变通过调节肿瘤免疫微环境促进胰腺癌(PACA)的侵袭和不良预后。然而,驱动的免疫格局和临床意义仍不明确。在本研究中,我们应用共识聚类和加权相关网络分析(WGCNA)来识别两种异质性免疫亚型和免疫基因。结合由突变状态确定的驱动基因,通过机器学习算法在ICGC-AU2(微阵列数据)中开发了一种驱动免疫特征(SDIS),然后通过RNA测序数据(TCGA、ICGC-AU和ICGC-CA)和微阵列数据(GSE62452和GSE85916)进行验证。高风险组显示出更差的预后,多变量Cox回归表明SDIS是一个独立的预后因素。在六个队列中,SDIS在预测预后方面也表现出优异的准确性。此外,高风险组的特征是/突变和缺失的频率更高,免疫检查点分子表达更高,对化疗和免疫治疗更敏感。同时,低风险组在代谢相关途径中显著富集,提示靶向肿瘤代谢开发特定药物的潜力。总体而言,SDIS可以可靠地预测PACA的预后,这可能成为临床环境中进一步指导化疗和免疫治疗决策的有吸引力的平台。