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基于归一化流的神经成像双向关系可逆建模:在脑老化中的应用

Invertible Modeling of Bidirectional Relationships in Neuroimaging With Normalizing Flows: Application to Brain Aging.

作者信息

Wilms Matthias, Bannister Jordan J, Mouches Pauline, MacDonald M Ethan, Rajashekar Deepthi, Langner Sonke, Forkert Nils D

出版信息

IEEE Trans Med Imaging. 2022 Sep;41(9):2331-2347. doi: 10.1109/TMI.2022.3161947. Epub 2022 Aug 31.

DOI:10.1109/TMI.2022.3161947
PMID:35324436
Abstract

Many machine learning tasks in neuroimaging aim at modeling complex relationships between a brain's morphology as seen in structural MR images and clinical scores and variables of interest. A frequently modeled process is healthy brain aging for which many image-based brain age estimation or age-conditioned brain morphology template generation approaches exist. While age estimation is a regression task, template generation is related to generative modeling. Both tasks can be seen as inverse directions of the same relationship between brain morphology and age. However, this view is rarely exploited and most existing approaches train separate models for each direction. In this paper, we propose a novel bidirectional approach that unifies score regression and generative morphology modeling and we use it to build a bidirectional brain aging model. We achieve this by defining an invertible normalizing flow architecture that learns a probability distribution of 3D brain morphology conditioned on age. The use of full 3D brain data is achieved by deriving a manifold-constrained formulation that models morphology variations within a low-dimensional subspace of diffeomorphic transformations. This modeling idea is evaluated on a database of MR scans of more than 5000 subjects. The evaluation results show that our bidirectional brain aging model (1) accurately estimates brain age, (2) is able to visually explain its decisions through attribution maps and counterfactuals, (3) generates realistic age-specific brain morphology templates, (4) supports the analysis of morphological variations, and (5) can be utilized for subject-specific brain aging simulation.

摘要

神经影像学中的许多机器学习任务旨在对结构磁共振图像中所见的大脑形态与临床评分及感兴趣的变量之间的复杂关系进行建模。一个经常被建模的过程是健康大脑衰老,针对此存在许多基于图像的脑龄估计或年龄条件脑形态模板生成方法。虽然年龄估计是一个回归任务,但模板生成与生成建模相关。这两个任务都可视为大脑形态与年龄之间同一关系的相反方向。然而,这种观点很少被利用,并且大多数现有方法针对每个方向训练单独的模型。在本文中,我们提出了一种新颖的双向方法,该方法统一了评分回归和生成形态建模,并使用它来构建一个双向脑衰老模型。我们通过定义一种可逆归一化流架构来实现这一点,该架构学习以年龄为条件的三维大脑形态的概率分布。通过推导一种流形约束公式来实现对完整三维大脑数据的使用,该公式对低维微分同胚变换子空间内的形态变化进行建模。在一个包含5000多名受试者的磁共振扫描数据库上对这种建模思想进行了评估。评估结果表明,我们的双向脑衰老模型(1)能够准确估计脑龄,(2)能够通过归因图和反事实直观地解释其决策,(3)生成逼真的特定年龄脑形态模板,(4)支持对形态变化的分析,以及(5)可用于特定个体的脑衰老模拟。

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